PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PDK_30s1022651g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 704aa MW: 80998 Da PI: 8.4015

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1022651g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.5	3e-25	35	122	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YAk vGFsvrk+ +++ +g i++rt+vC+keg++ ++k++ ++ +++r+++rtgC a+l++k + +g ++v++++ HnHel+ PDK_30s1022651g002 35 QFYNNYAKVVGFSVRKAWINRR-ASGVIISRTYVCYKEGYQGNRKDE-SEVKKPRQNERTGCLAHLTIKITANGAYRVSEFHPMHNHELV 122 6**************99986.9999*************999.9999**********************************97 PP
2	FAR1	82.4	7.8e-26	193	282	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YAk++GF+vrk+ +++ +g i++rt+vC+keg+ ++k++ +++++r r+++rtgC a++++k+ k+g+++vt+++ HnHe++ PDK_30s1022651g002 193 QFYNDYAKRIGFDVRKAWVNRR-SSGVIISRTYVCYKEGYYGNKKDEnQVEKHRIRPNERTGCLARMVIKLAKNGRYRVTEFQPMHNHEFV 282 6**************99886.8999********9877666647888999********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.8E-23	35	122	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.1E-23	193	282	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.8E-11	321	365	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.73	539	586	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.2E-6	560	583	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.5E-4	561	588	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence Send to blast
MAELAERNPP SEDADDTSWV PRVDMEFKSD EAAYQFYNNY AKVVGFSVRK AWINRRASGV 60 IISRTYVCYK EGYQGNRKDE SEVKKPRQNE RTGCLAHLTI KITANGAYRV SEFHPMHNHE 120 LVAPANILKS HRVAKRARAV IANAASQKAM MECLVRQAGG YRQVAFVSVQ DAADKSWAPK 180 VDMEFENDEK AYQFYNDYAK RIGFDVRKAW VNRRSSGVII SRTYVCYKEG YYGNKKDENQ 240 VEKHRIRPNE RTGCLARMVI KLAKNGRYRV TEFQPMHNHE FVTARTAHTL KSHRAANKIR 300 NAEVNSVDDS CASPKAIHDH TFKTAMYGKQ PQVILTDQNP LIRNAINLVW PATTHRVCVW 360 HMYQNASKYL GQVFQGSRTF AYDFSRCLFD CEEEEEFVSA WGKMLEKYDL KDNEWLKMLF 420 EDRKKWAVAY GRETFCADMK STQRLNSISG TLKENLSPER DLLQFLKHFE RMLDEQWDAE 480 LQADCHATSS TTIIAPSRML KQAASVYTPA MFEMFQREFE MSMDCMVHNS GAVETIYEYK 540 VISEDNPKVH LVRFDSLNGT LVCSCKMFEF VGIQCRHVLK ALDIINIKEL PPQYYLKRWR 600 KDAKVGSLRD NLGLATDIDP SSSKATRLSS LCRIISIVAA RAAETVEGYT FVQNQSDQLF 660 DHVVAARAAE TVEGYTFIQN QSDQLFDHVY QILQARPPEE LQIS

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence Send to blast

MAELAERNPP SEDADDTSWV PRVDMEFKSD EAAYQFYNNY AKVVGFSVRK AWINRRASGV  60
IISRTYVCYK EGYQGNRKDE SEVKKPRQNE RTGCLAHLTI KITANGAYRV SEFHPMHNHE  120
LVAPANILKS HRVAKRARAV IANAASQKAM MECLVRQAGG YRQVAFVSVQ DAADKSWAPK  180
VDMEFENDEK AYQFYNDYAK RIGFDVRKAW VNRRSSGVII SRTYVCYKEG YYGNKKDENQ  240
VEKHRIRPNE RTGCLARMVI KLAKNGRYRV TEFQPMHNHE FVTARTAHTL KSHRAANKIR  300
NAEVNSVDDS CASPKAIHDH TFKTAMYGKQ PQVILTDQNP LIRNAINLVW PATTHRVCVW  360
HMYQNASKYL GQVFQGSRTF AYDFSRCLFD CEEEEEFVSA WGKMLEKYDL KDNEWLKMLF  420
EDRKKWAVAY GRETFCADMK STQRLNSISG TLKENLSPER DLLQFLKHFE RMLDEQWDAE  480
LQADCHATSS TTIIAPSRML KQAASVYTPA MFEMFQREFE MSMDCMVHNS GAVETIYEYK  540
VISEDNPKVH LVRFDSLNGT LVCSCKMFEF VGIQCRHVLK ALDIINIKEL PPQYYLKRWR  600
KDAKVGSLRD NLGLATDIDP SSSKATRLSS LCRIISIVAA RAAETVEGYT FVQNQSDQLF  660
DHVVAARAAE TVEGYTFIQN QSDQLFDHVY QILQARPPEE LQIS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026658126.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A3Q0HU82	0.0	A0A3Q0HU82_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRING	XP_008781580.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-58	FAR1-related sequence 5