PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1017891g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 95aa    MW: 10743 Da    PI: 4.8728
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1017891g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.71e-112565244
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                          +T++E+ l+++  ++lG + W++Ia +++ gRt++++  +w
  PDK_30s1017891g002 25 VEFTEDEETLIARMYNLLGDR-WSLIAGRIP-GRTAEEIEKYW 65
                        689****************99.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.9841973IPR017930Myb domain
SMARTSM007173.5E-102371IPR001005SANT/Myb domain
PfamPF002499.3E-112566IPR001005SANT/Myb domain
SuperFamilySSF466899.36E-102672IPR009057Homeodomain-like
CDDcd001676.83E-92665No hitNo description
Gene3DG3DSA:1.10.10.607.5E-142669IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009913Biological Processepidermal cell differentiation
GO:0010063Biological Processpositive regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MADLDQSSED VSVDTREGNS QDSKVEFTED EETLIARMYN LLGDRWSLIA GRIPGRTAEE  60
IEKYWTSSCK KGRKHPVSMS VYRSGVMQIS KPTVI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008806409.11e-42transcription factor CPC-like
TrEMBLA0A2H3Z0403e-41A0A2H3Z040_PHODC; transcription factor CPC-like
STRINGXP_008806409.16e-42(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52753157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.19e-19MYB_related family protein