PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1014611g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family G2-like
Protein Properties Length: 424aa    MW: 46476.7 Da    PI: 6.9288
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1014611g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.43.3e-28152206156
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                         k +++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++v+SHLQkYR++
  PDK_30s1014611g003 152 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIDCLTRHNVASHLQKYRSH 206
                         5689*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.055149208IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-27150209IPR009057Homeodomain-like
SuperFamilySSF466892.15E-18150209IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-26152206IPR006447Myb domain, plants
PfamPF002494.5E-8155204IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MLAVSPPRGS NGEERDGEVG GLAGNFSDDT LLEDINFDDL FMGFDDRDIL PDLEVDPAEF  60
FSDGPRGGEA SSGMVMAVES AVGSDGGGQE NGLMEGEMKV EKDLSRREEV TSATTKEDTV  120
AVAAEVRSPS SEADRGRKST ATATKNSQGK RKVKVDWTPE LHRRFVQAVE QLGVDKAVPS  180
RILELMGIDC LTRHNVASHL QKYRSHRKHL LAREKEAASW SQRRQIYSPC GASAKRDMNP  240
WVAPTIGFPP PPPPPPPIQS FRPLHVWGHP TADPPLVHMW PRHLALRTPT PPWAPQPPLP  300
PPSNPSYWHH HYHKGPREGW VPHTLTQGTP CFPQAFPTRF PAPPVPGVLP YPFYRALLPP  360
ATKHSVPQLQ LDAYPSKESI DAAIGDALAK PWSPLPLGLK PPSLESVLVE LQRQGVSKVP  420
PMCG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-16149204257ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9617168e-53EU961716.1 Zea mays clone 237829 dnaJ subfamily B member 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008783138.10.0probable transcription factor GLK1
SwissprotQ5Z5I41e-96GLK1_ORYSJ; Probable transcription factor GLK1
TrEMBLA0A2H3XFT70.0A0A2H3XFT7_PHODC; probable transcription factor GLK1
STRINGXP_008783138.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.13e-74GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y, et al.
    A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes.
    Plant Methods, 2011. 7(1): p. 30
    [PMID:21961694]