PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1011221g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HSF
Protein Properties Length: 302aa    MW: 35188.8 Da    PI: 5.5168
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1011221g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.41.8e-36441352102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d++++++isws+++nsfvv+d+ +fa ++Lp+yFkh nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++
  PDK_30s1011221g001  44 FLNKTYDMVDDPKTDRVISWSSTNNSFVVWDPATFAMTLLPRYFKHGNFSSFVRQLNTYGFRKVDPDT---------WEFANEGFLRGQRH 125
                         9****************************************************************998.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++ikr+k 
  PDK_30s1011221g001 126 LLKTIKRRKP 135
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.2E-6040133IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.3E-3940133IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.35E-3640133IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.8E-204467IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.5E-3244133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-208294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-2095107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDPVLNIVKE EYLEAEAISS RLEDPPMEAP RPMEGLHEVG PPPFLNKTYD MVDDPKTDRV  60
ISWSSTNNSF VVWDPATFAM TLLPRYFKHG NFSSFVRQLN TYGFRKVDPD TWEFANEGFL  120
RGQRHLLKTI KRRKPPSYPN PRQQNLDPCL EVGRFGFDGE INRLKRDKNI LMAEVVKLRQ  180
EQQATRAHLQ AMEDRLHGAE QKQQQMMGFL ARAVQSPDFL QQLVQQQERR KELEEAISKK  240
RRRPIDRVPY HYEGEPTEEM GSLYGPEVSE LESLALEIQG LRKIETNDFR VETNDTPPIF  300
DD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-264213318120Heat shock factor protein 1
5d5u_B8e-264213327129Heat shock factor protein 1
5d5v_B8e-264213327129Heat shock factor protein 1
5d5v_D8e-264213327129Heat shock factor protein 1
5hdg_A5e-26421338110Heat shock factor protein 1
5hdn_A5e-26421338110Heat shock factor protein 1
5hdn_B5e-26421338110Heat shock factor protein 1
5hdn_C5e-26421338110Heat shock factor protein 1
5hdn_D5e-26421338110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126132LKTIKRR
2228242RRKELEEAISKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008813518.10.0heat stress transcription factor A-2c-like isoform X1
SwissprotQ338B01e-127HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBLA0A2H3ZHB70.0A0A2H3ZHB7_PHODC; heat stress transcription factor A-2c-like isoform X1
STRINGXP_008813517.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-112heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Singh A, et al.
    OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).
    Cell Stress Chaperones, 2012. 17(2): p. 243-54
    [PMID:22147560]