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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PDK_30s1008141g001 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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| Family | bHLH | ||||||||
| Protein Properties | Length: 338aa MW: 37582.4 Da PI: 5.4987 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 20.5 | 8.4e-07 | 168 | 207 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
RR++i +++ L++l+P + +k Ka++L + ++Y++sLq
PDK_30s1008141g001 168 RREKISERMKFLQDLVPGC----NKITGKASMLDEIINYVQSLQ 207
9******************....999*****************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 11.331 | 156 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 1.7E-12 | 167 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 0.008 | 167 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 1.47E-7 | 168 | 211 | No hit | No description |
| Gene3D | G3DSA:4.10.280.10 | 1.4E-13 | 169 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 338 aa Download sequence Send to blast |
MATSDRNLLD RLKWHQPQQG SYFTLSNRCY ANDSYLLASC IDQENRPTTI CSSYGKDKEE 60 ESKQQLNNRY TMLGSSPLQK ESTTSASKKR KADAFHSGKV GCTGDGIESS IKEKILIKGD 120 KGGTVLVVKP EVENQQSNSN DKKKETSGEN SKENSKALAP MQDYIHVRRE KISERMKFLQ 180 DLVPGCNKIT GKASMLDEII NYVQSLQKQV EFLSMKLASA NSTLEYNIDE FFSKEMDPVS 240 STTCPPAGMP CEPVALSYLP FNNSEQAVAR GGLDMALDHP ELALRRTMSA PAAVPEAFMD 300 SCYTVTTVNG SSVTWDTNMR SCYDMVIHQG LEFPLEDL |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010925976.1 | 0.0 | transcription factor bHLH63 isoform X1 | ||||
| TrEMBL | A0A3Q0IL35 | 1e-168 | A0A3Q0IL35_PHODC; transcription factor HBI1-like | ||||
| STRING | XP_008810718.1 | 0.0 | (Phoenix dactylifera) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP50816 | 2 | 2 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G07340.1 | 3e-35 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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