PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1001281g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 459aa    MW: 50252.7 Da    PI: 7.6552
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1001281g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.21.7e-14251298355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++hn+ ErrRRd+i  ++  L+el+P++      Kl+ a++L +A+ Y+ksLq
  PDK_30s1001281g002 251 QMHNQTERRRRDKITAKLKALQELIPSS-----HKLDTASMLDEAIAYMKSLQ 298
                         78*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5084513.1899129IPR003388Reticulon
PfamPF024534.9E-1810128IPR003388Reticulon
CDDcd000832.24E-15244302No hitNo description
SuperFamilySSF474596.8E-16246306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.412248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-12251298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-16252304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-15254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MASPSLLYGA DIVLWRNKPL SAGILAAVTV IWLLFEVVGY HLLALLCHIT IVAMLAVFIW  60
DNGADLVKLP SPSIPGDYLP VAAFREVVLT FKEVVLTFKE AVPTFQSMFY GFMFLLRNIA  120
YGKDLKSLLL RRDMTNRSSS PWGFQEAGED DDDAIPRQPS ALIVSSDMDY FAEILGPLSP  180
FGDAHFSLHA TATSGRVGVG EGESSGEFEK GSSSGTKSDA MGLEDPRSGP SQEVERKREI  240
SRKRKRNRTS QMHNQTERRR RDKITAKLKA LQELIPSSHK LDTASMLDEA IAYMKSLQQQ  300
IQAKRTYFIF IVMIMSGAAL YQAPFLSPAA VQCLGAPQFP PFSSSGPYNA MSLGFGMGMS  360
SIACSIRPPL LSSLSPLPAT SLLPMPTLNS IPHYRSPLRG HYMPFASSPE FPASVVTQAA  420
RNQSSQAESF SSINQAETGR QEMQSVIADD LQIPAITQV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241259RKRKRNRTSQMHNQTERRR
2243260RKRNRTSQMHNQTERRRR
3256261ERRRRD
4257262RRRRDK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010916461.11e-167transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 isoform X3
STRINGXP_008809179.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5076422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-17phytochrome interacting factor 3