PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote238038890041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 227aa MW: 25771.4 Da PI: 7.5766 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.3 | 1.4e-34 | 22 | 113 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 Fl k+y ++ed++++++isw++ g++fvv+++ efa ++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++ weF+ Ote238038890041|238038890041 22 FLLKTYMLVEDPATDDVISWNDAGTAFVVWQPAEFAADLLPTLFKHSNFSSFVRQLNTYGFRKVASNR---------WEFS 93 9****************************************************************998.........**** PP ESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 83 hksFkkgkkellekikrkks 102 +++F+kg+++ l++i+r+k Ote238038890041|238038890041 94 NDKFRKGERDRLCEIRRRKA 113 *****************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.4E-36 | 15 | 106 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.58E-32 | 18 | 111 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 8.9E-53 | 18 | 111 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.3E-19 | 22 | 45 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.7E-31 | 22 | 111 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.3E-19 | 60 | 72 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 61 | 85 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.3E-19 | 73 | 85 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 227 aa Download sequence Send to blast |
MEAGERDKEL VEYVRKASPP PFLLKTYMLV EDPATDDVIS WNDAGTAFVV WQPAEFAADL 60 LPTLFKHSNF SSFVRQLNTY GFRKVASNRW EFSNDKFRKG ERDRLCEIRR RKAWSXXXXX 120 XXXXXXAAEP PPEEQRSSST SSSSEFTTLI DENKRLKQEN GVLSSELAIM KKKCKELLDL 180 VAVHGGEAEE GPKLFGVRLG VKGEMENKRK RGHEMGESAG LLIHANN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5w_B | 2e-21 | 22 | 111 | 4 | 104 | Putative transcription factor |
5d5x_B | 2e-21 | 22 | 111 | 4 | 104 | Putative transcription factor |
5d5x_E | 2e-21 | 22 | 111 | 4 | 104 | Putative transcription factor |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011033345.1 | 1e-102 | PREDICTED: heat stress transcription factor B-3-like | ||||
Refseq | XP_012828086.1 | 1e-101 | PREDICTED: heat stress transcription factor B-3 | ||||
Refseq | XP_022888274.1 | 1e-101 | heat stress transcription factor B-3-like | ||||
Swissprot | O22230 | 4e-68 | HSFB3_ARATH; Heat stress transcription factor B-3 | ||||
TrEMBL | A0A4D9A2M1 | 1e-109 | A0A4D9A2M1_SALSN; Heat shock transcription factor, other eukaryote | ||||
STRING | Migut.J01747.1.p | 1e-101 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4423 | 22 | 41 |