PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote238035290011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

C2H2

Protein Properties

Length: 1031aa MW: 114473 Da PI: 4.6174

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote238035290011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	229	250	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C++C+ +F++k+++ +H+++ H Ote238035290011\|238035290011 229 CNKCNITFNDKDEFLQHQSSlH 250 ******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.57E-5	101	148	IPR016177	DNA-binding domain
SMART	SM00355	0.045	227	250	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	229	250	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.37	272	294	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.328	272	299	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	274	294	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1031 aa Download sequence Send to blast
LAVEVSVVDA SDIDGFPIPS LNEIVARGIV DEEDREVLNS DGVAVDLAAL GAAEHPYKEE 60 IQRRTEGLRT EEELLGFLTG LNGKWGSRRK KRRIVDAGEF GSKLPVGWKL LLSVKKKNGF 120 VWLYCRRYIS PSGLHFVSCK GVSSYLLSLH GVHGTNQHST AQYNDIFTDA DKLIPVPVAI 180 QDGNEIENMV SCAPSPHSDS ATDYHEIQVV VNEGDLDLPE DIIGESLFCN KCNITFNDKD 240 EFLQHQSSLH WINRNKNVAR ITDGVIIKDG KYECQFCHKI FSERHRYNGH VGTHVRFQAR 300 TTGESPESAH PSSLNELPTR DIAMEGPSKS HNPMEVCNSI KNNGSSICSH LNTNDEHFRN 360 LEEASGKISV TVKANDIVTE TSPCSAAEDL FSSKENKSFC EDAYPNDSAM ETIDRSSSLQ 420 DKRLESSLPH NDAADSDMDG CLIDNSAASE KPKQTTVSES RLFDFNDHVE ECLLVNNNKH 480 KNDDSGDQTR NELKLDSQKL AVNGSVFANF GIQENQEKLT VTIKEQSDWD YVPCKNIDTT 540 ESISTSGSEA SKHVKDPTIS LRLIGDDEKA RREDNVPYSS VEYKVDDTLS FGKCEKESSQ 600 ADNDDGLKRH EEMEFGMASV IQSWNEQENA SKKGDTEVFT HLLEAPTVQD MSRSQLFADD 660 ESMYRCEKND GGVCKRETKV PELDSLPNFG NGQSSDLFSS SCAQLSTNPI TGKQDXXXXX 720 XXXXXXXXXX XXPVEDNMIT IFNNTMEERK QDPSEVMLVD QPGVSGVPDK TYISNKIYNT 780 PANPFSRIEN AGKHELSLSF GSLHTDLCIQ SNNRVEQESY QANSFDTNSV VPKMYGDPTH 840 SSILSSNMAA NLEQNSPFGY HNLSFHDRTH EPGNSFDVAH PERDWVETER NKLRASSHNF 900 MIGFGNNSLQ TSESVAANCS WRADQDNVYG GCFDANSGPQ IPSSNCLPTC GLAPNKDQES 960 SFNYGVQSEM MRPGRTQPVE YSFMGDECGE AKVFPSVCVW CRNVFFDEAG MQTGAICQSC 1020 SSNIPGHFNV L

Sequence ? help Back to Top

Protein Sequence Length: 1031 aa Download sequence Send to blast

LAVEVSVVDA SDIDGFPIPS LNEIVARGIV DEEDREVLNS DGVAVDLAAL GAAEHPYKEE  60
IQRRTEGLRT EEELLGFLTG LNGKWGSRRK KRRIVDAGEF GSKLPVGWKL LLSVKKKNGF  120
VWLYCRRYIS PSGLHFVSCK GVSSYLLSLH GVHGTNQHST AQYNDIFTDA DKLIPVPVAI  180
QDGNEIENMV SCAPSPHSDS ATDYHEIQVV VNEGDLDLPE DIIGESLFCN KCNITFNDKD  240
EFLQHQSSLH WINRNKNVAR ITDGVIIKDG KYECQFCHKI FSERHRYNGH VGTHVRFQAR  300
TTGESPESAH PSSLNELPTR DIAMEGPSKS HNPMEVCNSI KNNGSSICSH LNTNDEHFRN  360
LEEASGKISV TVKANDIVTE TSPCSAAEDL FSSKENKSFC EDAYPNDSAM ETIDRSSSLQ  420
DKRLESSLPH NDAADSDMDG CLIDNSAASE KPKQTTVSES RLFDFNDHVE ECLLVNNNKH  480
KNDDSGDQTR NELKLDSQKL AVNGSVFANF GIQENQEKLT VTIKEQSDWD YVPCKNIDTT  540
ESISTSGSEA SKHVKDPTIS LRLIGDDEKA RREDNVPYSS VEYKVDDTLS FGKCEKESSQ  600
ADNDDGLKRH EEMEFGMASV IQSWNEQENA SKKGDTEVFT HLLEAPTVQD MSRSQLFADD  660
ESMYRCEKND GGVCKRETKV PELDSLPNFG NGQSSDLFSS SCAQLSTNPI TGKQDXXXXX  720
XXXXXXXXXX XXPVEDNMIT IFNNTMEERK QDPSEVMLVD QPGVSGVPDK TYISNKIYNT  780
PANPFSRIEN AGKHELSLSF GSLHTDLCIQ SNNRVEQESY QANSFDTNSV VPKMYGDPTH  840
SSILSSNMAA NLEQNSPFGY HNLSFHDRTH EPGNSFDVAH PERDWVETER NKLRASSHNF  900
MIGFGNNSLQ TSESVAANCS WRADQDNVYG GCFDANSGPQ IPSSNCLPTC GLAPNKDQES  960
SFNYGVQSEM MRPGRTQPVE YSFMGDECGE AKVFPSVCVW CRNVFFDEAG MQTGAICQSC  1020
SSNIPGHFNV L

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100981.1	0.0	uncharacterized protein LOC105179084
TrEMBL	A0A4D9BD51	0.0	A0A4D9BD51_SALSN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7850	16	19