PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote237934390001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NF-YB

Protein Properties

Length: 160aa MW: 17829.4 Da PI: 6.5307

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote237934390001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	169.1	5.3e-53	15	110	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 ++q+ flPianv+rimkk lPanakisk+aketvq+cvsefisfvt+easdkcqrekrktingddllwa++tlGfe+yv p Ote237934390001\|237934390001 15 KDQEMFLPIANVGRIMKKSLPANAKISKEAKETVQKCVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFENYVVP 95 789**************************************************************************** PP NF-YB 83 lkvylkkyrelegek 97 lk yl +yre+e ek Ote237934390001\|237934390001 96 LKEYLGQYRETEVEK 110 *********9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.5E-51	12	120	IPR009072	Histone-fold
SuperFamily	SSF47113	3.42E-39	17	125	IPR009072	Histone-fold
Pfam	PF00808	6.6E-28	19	84	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	7.0E-18	48	66	No hit	No description
PROSITE pattern	PS00685	0	51	67	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	7.0E-18	67	85	No hit	No description
PRINTS	PR00615	7.0E-18	86	104	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MTGTRIPSSP SSSDKDQEMF LPIANVGRIM KKSLPANAKI SKEAKETVQK CVSEFISFVT 60 GEASDKCQRE KRKTINGDDL LWAMTTLGFE NYVVPLKEYL GQYRETEVEK NAMARHEDDS 120 SSSPPPLPGN FDGANPSFLH GFRXXXXXXX XXXXIGFGKD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-43	15	105	2	92	Transcription factor HapC (Eurofung)
4g92_B	2e-43	15	105	2	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006493850.1	2e-64	nuclear transcription factor Y subunit B-3-like
Refseq	XP_024037043.1	2e-64	nuclear transcription factor Y subunit B-3
Swissprot	O23310	2e-55	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	A0A2H5QFS3	2e-63	A0A2H5QFS3_CITUN; Uncharacterized protein
STRING	XP_006493850.1	8e-64	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Publications ? help Back to Top
Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]