PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote237571780001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 355aa    MW: 37059 Da    PI: 8.9536
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote237571780001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.4e-081181027
                                  GGTS--TTTTT-SS-SSS CS
                       zf-CCCH 10 artGtCkyGdrCkFaHgp 27
                                  +rtG Ck+G +Ck++H++
  Ote237571780001|237571780001  1 MRTGMCKFGVSCKYHHPK 18
                                  8***************96 PP
2zf-CCCH28.72.2e-093964227
                                  -S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                                  ++++C+++ +tG+Ck+G +CkF+H++
  Ote237571780001|237571780001 39 GEKECSYYVKTGQCKFGFTCKFHHPQ 64
                                  7899********************97 PP
3zf-CCCH37.93e-12211235327
                                   S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                    ++C++++rtG Ck+G++Ck++H+p
  Ote237571780001|237571780001 211 LPECQYYLRTGDCKFGATCKYHHPP 235
                                   689********************97 PP
4zf-CCCH345.1e-11257280326
                                   S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                    +lC+++ ++G Ck+G++CkF H+
  Ote237571780001|237571780001 257 APLCSHYTQNGVCKFGPSCKFDHP 280
                                   68*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035646118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.652119IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-5118IPR000571Zinc finger, CCCH-type
SMARTSM003560.00123764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1733765IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-63965IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-73964IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-6208235IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.309208236IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9211235IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5213235IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4214235IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-6254281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356254282IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8257280IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6257284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-6259280IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MRTGMCKFGV SCKYHHPKQG IGSSAPVALN FYGYPLRPGE KECSYYVKTG QCKFGFTCKF  60
HHPQPAGIQM PVPAPGHGPL TASAAVPTQA AYPTGTTPSV QTSQQYGVFQ GNWPIARPAM  120
LPGSYVSGSY GPMILPPGVV PVPGWTPYPA PVSPVASPST QSTVGTAPVY GITQLSPSAT  180
AYPGPYLSIT SSAGPSSGSQ KEQLFPERPG LPECQYYLRT GDCKFGATCK YHHPPEWSAS  240
KSMYVLSPLG LPLRPGAPLC SHYTQNGVCK FGPSCKFDHP IRNLSDVAIA PYAVGSTIAT  300
LAPSSFSSLM SCMSSSASAS VGSIFSKPQS SVDQQSGQGG STSSTSVSHG GEART
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071464.11e-162zinc finger CCCH domain-containing protein 34
RefseqXP_011071465.11e-162zinc finger CCCH domain-containing protein 34
SwissprotQ5NAW21e-105C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A4D8Z7M81e-176A0A4D8Z7M8_SALSN; Uncharacterized protein
STRINGMigut.G00186.1.p1e-155(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]