PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote237518130011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 220aa    MW: 24293.4 Da    PI: 9.9291
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote237518130011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.61.3e-3375132259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   +Dgy+WrKYGqK vk+s+fprsYY+Ct a+C+vkk+vers +dp +v++tYeg+H+h+
  Ote237518130011|237518130011  75 EDGYRWRKYGQKAVKNSPFPRSYYKCTNASCNVKKRVERSFNDPGIVVTTYEGQHTHQ 132
                                   8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-3459134IPR003657WRKY domain
SuperFamilySSF1182902.48E-2966134IPR003657WRKY domain
PROSITE profilePS5081131.13569134IPR003657WRKY domain
SMARTSM007744.0E-3974133IPR003657WRKY domain
PfamPF031064.6E-2675132IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MKDFGGGGAS SSAFVEPSID RNRKVEEERK LPEGFNAPAT PNSSSISLKA KKTIQKKQRE  60
PRFAFMTKSE VDHLEDGYRW RKYGQKAVKN SPFPRSYYKC TNASCNVKKR VERSFNDPGI  120
VVTTYEGQHT HQSPQILRPP SAAPLPYNGF SAAQSPPQLM AHNQNLINYS VLLNGYMGIA  180
NCGGGSQQLS FSSPALMAAN NGLLQDIVPW PAAKREDELN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2864134777Probable WRKY transcription factor 4
2lex_A2e-2864134777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079532.12e-64probable WRKY transcription factor 23
SwissprotO229004e-51WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A0D5YAG92e-67A0A0D5YAG9_SALMI; WRKY protein
STRINGMigut.D00064.1.p5e-59(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13092479
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]