PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100277030081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HSF
Protein Properties Length: 385aa    MW: 43717.8 Da    PI: 5.5924
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100277030081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.41.3e-34151052101
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl k+ye+++d+ +++++sws +g+sfvv+++ efa+++LpkyFkh+nf+SF+RQLn+YgF+k++ ++         weF+
  Ote100277030081|100277030081  15 FLLKTYEMVDDPLTNSVVSWSYTGHSFVVWNPPEFARDLLPKYFKHNNFSSFIRQLNTYGFRKTDPDQ---------WEFA 86 
                                   9***************************************************************9998.........**** PP

                                   ESXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkk 101
                                   +++F +g+++ll++i+r+k
  Ote100277030081|100277030081  87 NEEFIRGQRHLLKSIHRRK 105
                                   *****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.6E-38999IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.17E-3410104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-5911104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-191538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.3E-3115104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-195365IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MMDGSIGSSN SPAPFLLKTY EMVDDPLTNS VVSWSYTGHS FVVWNPPEFA RDLLPKYFKH  60
NNFSSFIRQL NTYGFRKTDP DQWEFANEEF IRGQRHLLKS IHRRKPIHSH SGQGNVVPLT  120
DSEREHFEKE IQRLKAEKAL LQSEVDRHKD ENQGYENQLR SLLQTLQNID FRQRQLMISL  180
AQLLEKPVHS LNTMELSESQ NKRRRSLALN LLRGREEENQ GMSFLDNSRT SSLPLINMEQ  240
VDKLDSSLNF SEKFLYGTDQ IPSKDFQDFR LHPTCSPVVT EVAASSGDSD LNIPLSSSGC  300
HLSASTSRDY HSSPELAASS TYVDSPAISS ICIDLDTRLK PVGIDVNITP TKIPDNEMPK  360
DQEQDITVPS AAAGPNDVFW QQFLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-25410419129Heat shock factor protein 1
5d5v_B1e-25410419129Heat shock factor protein 1
5d5v_D1e-25410419129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554487.10.0heat stress transcription factor A-4b
TrEMBLA0A4D9ATP70.0A0A4D9ATP7_SALSN; Heat shock transcription factor, other eukaryote
STRINGMigut.H02116.1.p1e-154(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84352329