PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100274510061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HSF
Protein Properties Length: 407aa    MW: 46348.6 Da    PI: 4.9056
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100274510061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.9e-35141052102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl k+ye+++d+ +++++sws+n++sf+vl++ ef+k++Lp+yFkhsnf+SF+RQLn+YgF+k++ e+         weF+
  Ote100274510061|100274510061  14 FLAKTYEMVDDPCTDSIVSWSQNNKSFIVLNPPEFSKELLPRYFKHSNFSSFIRQLNTYGFRKIDPEQ---------WEFA 85 
                                   9***************************************************************9998.........**** PP

                                   ESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                   ++ F +g+ +l+++i+r+k 
  Ote100274510061|100274510061  86 NEDFVRGQPHLMRNIHRRKP 105
                                   *****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.25E-369103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.1E-3910103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-6210103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0009408Biological Processresponse to heat
GO:0009733Biological Processresponse to auxin
GO:0009958Biological Processpositive gravitropism
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048527Biological Processlateral root development
GO:0048530Biological Processfruit morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MDEASCSANS LPPFLAKTYE MVDDPCTDSI VSWSQNNKSF IVLNPPEFSK ELLPRYFKHS  60
NFSSFIRQLN TYGFRKIDPE QWEFANEDFV RGQPHLMRNI HRRKPVHSHS TPNLASLPPL  120
TELERKGYKE DIERLKCDKE SLNVELQSLK EERQDLTLQM RALTERIQNV EQHHGSMLSS  180
LAETLHRPDF SLDLMPQMEV HDRKRRFPGN RYLCQETSTE DSQRPSSQNM SIENLDVDAL  240
STFNKELLEQ MDSSLMLWEK ILFDVGEGIG RCNSSLELVE STSCPLSPSM SYTQLNLEVG  300
GNTSEIDMNS TPRTASAPTP QMQRLTEEQA AGTTTNARAG VNDVFWEQFL TENPGSNGTS  360
EFQTEKDAGD GKKNESKPGD HGMHWWNMRS VNNLAEQLGH LTPAEKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-24410319129Heat shock factor protein 1
5d5v_B9e-24410319129Heat shock factor protein 1
5d5v_D9e-24410319129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101446.10.0heat stress transcription factor A-4a
RefseqXP_011101447.10.0heat stress transcription factor A-4a
TrEMBLA0A4D8XUR00.0A0A4D8XUR0_SALSN; Heat shock transcription factor, other eukaryote
STRINGMigut.M00999.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344