PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100273530051
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NF-YA
Protein Properties Length: 231aa    MW: 25701 Da    PI: 9.7109
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100273530051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.15.1e-32143199158
                     CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                   +ep++VNaKQy++Il+RRq+Rak+e+e+kl +k rkpylheSRh hAlrR+Rg gGrF
  Ote100273530051|100273530051 143 EEPVFVNAKQYHGILRRRQSRAKAESENKL-SKPRKPYLHESRHLHALRRARGIGGRF 199
                                   69****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.9E-35141202IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.485142202IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.6E-27144199IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.9E-23145167IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860147167IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.9E-23176199IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MLLASFLRIN FRLRRSIVID SIPVSALQVC AHHSSIMTSS VHSLSDNSEA DEQQKHAEAY  60
VQPSSPVKGM CHTGIASPAM HYAAPAQVGA GNAQTAYPYP DPYYRSIFAP YETQPYPAQP  120
YPAQPMLMGI QQAGVPLPSE AVEEPVFVNA KQYHGILRRR QSRAKAESEN KLSKPRKPYL  180
HESRHLHALR RARGIGGRFQ KKNDKEVESS GKSQDNINLN SEKDVPRKDA D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-20142199158NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096682.11e-108nuclear transcription factor Y subunit A-7-like isoform X6
SwissprotQ84JP15e-57NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A4D9A4N01e-112A0A4D9A4N0_SALSN; Uncharacterized protein
STRINGMigut.M01893.1.p1e-102(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66502333
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]