PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100272260051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WRKY

Protein Properties

Length: 284aa MW: 32186.9 Da PI: 5.6431

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100272260051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.8	3e-30	133	191	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ve+s +dp++++itY+ eH h+ Ote100272260051\|100272260051 133 SDMWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVEQSCTDPSMFIITYSAEHSHS 191 79***********************998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.3E-31	118	193	IPR003657	WRKY domain
SuperFamily	SSF118290	4.05E-26	126	193	IPR003657	WRKY domain
PROSITE profile	PS50811	32.34	127	193	IPR003657	WRKY domain
SMART	SM00774	2.8E-35	132	192	IPR003657	WRKY domain
Pfam	PF03106	1.5E-25	134	190	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MSELVAEMEE DWSLQAIVRG SSGDFGKMEM DGLDSFHQHQ FDQDFTSFQD ILEGSACSSD 60 ELEELYKPFY KAATSFCLPG QSAVVADQDK LQPHDQSPSV TSPVAAVYTP KYKKRKNQQK 120 RVVMQVSAKD VSSDMWAWRK YGQKPIKGSP YPRSYYRCSS SKGCLARKQV EQSCTDPSMF 180 IITYSAEHSH SQPTRRNSLA GTVRQKFPSP KNPKPHKPDS PKIETEAPAA RIIKEEDQET 240 KEGSENIMMS EFVFNEDFFS GLEEFDEFVS HDHFPATARS CSWV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-18	122	193	4	74	WRKY transcription factor 1
5w3x_B	1e-18	123	194	8	80	Disease resistance protein RRS1
5w3x_D	1e-18	123	194	8	80	Disease resistance protein RRS1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012854209.1	4e-97	PREDICTED: probable WRKY transcription factor 29 isoform X1
Refseq	XP_012854210.1	3e-97	PREDICTED: probable WRKY transcription factor 29 isoform X2
TrEMBL	A0A0D5Y9B8	1e-118	A0A0D5Y9B8_SALMI; WRKY protein
STRING	Migut.A00718.1.p	2e-96	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5781	23	35