PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100270200051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

TCP

Protein Properties

Length: 308aa MW: 34814.1 Da PI: 7.5779

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100270200051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	102.3	8.2e-32	108	228	3	109
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........ea 75 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++++++s ++ Ote100270200051\|100270200051 108 GGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLQFPQPSLLpilhrpldQS 188 78*************************************************************776663333332222222 PP TCP 76 esssssasnsssg......kaaksaakskksqksaasaln 109 e+++ ++ ++ + +++++ ++ ++++ a a n Ote100270200051\|100270200051 189 EKQVLTVRFKDVSagenwtRSSEEGRQGTNQDNACAYAEN 228 2222222222222444443222222233333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.0E-28	109	190	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.019	109	167	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MVNPKPASSF LCEVFSICLG IFSDKSVKSH TSDSECKDMV ASDKPVVTFN HIWASNYEWH 60 KMRETDLTKQ ESCSTSDIAK NGAASSSSTT SWSRHKDPRI IRVSRTFGGK DRHSKVCTVR 120 GLRDRRVRLS VPTAIQLYDL QDRLGLNQPS KVVDWLLNAA KHEIDELPPL QFPQPSLLPI 180 LHRPLDQSEK QVLTVRFKDV SAGENWTRSS EEGRQGTNQD NACAYAENFS ESSLMSSFVR 240 WDPSNLTLSQ SHHQDWHNLS LVQMQSMPYS HSQISAEFDA KKLDFPSSTT VESCSLPDRP 300 MQLNITKQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-17	114	168	1	55	Putative transcription factor PCF6
5zkt_B	1e-17	114	168	1	55	Putative transcription factor PCF6
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099021.1	6e-66	transcription factor TCP5-like
Refseq	XP_011099023.1	6e-66	transcription factor TCP5-like
TrEMBL	A0A2J6LV19	2e-58	A0A2J6LV19_LACSA; Uncharacterized protein
TrEMBL	M0ZLP7	5e-59	M0ZLP7_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400003453	9e-60	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA821	24	99