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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100269130091 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | B3 | ||||||||
Protein Properties | Length: 238aa MW: 27255.9 Da PI: 10.6479 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.7 | 1e-13 | 152 | 221 | 18 | 93 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 l+ +f+++ ++ +++ +tl de+g +W v + rk++ l++GWk+F+ +++L +gD +vF+l+ + f+ + Ote100269130091|100269130091 152 LSSDFCRRR-LP-RNDGVVTLVDEQGLEWPVVYLARKTG----LSGGWKKFAVDHNLVDGDALVFQLITPTVFKVF 221 445566555.22.23346***************666665....***********************9976766554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.86E-20 | 137 | 225 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-17 | 137 | 225 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.76E-20 | 140 | 224 | No hit | No description |
SMART | SM01019 | 5.9E-17 | 142 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-11 | 152 | 220 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.899 | 152 | 226 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MVMSKVKYEA IRQQRLEENK KRLEELHLPL LSQALKTAST PKSSPVXXXX XXXXXXTHMK 60 KTKPRIARTE MVPVRRSLRF SNISAPQYQE VTVYDRVQLP RRVSRPRRVL LNRVYATEEA 120 RESGVKRAQE IESALGGDHP TFVRSMLPSH GLSSDFCRRR LPRNDGVVTL VDEQGLEWPV 180 VYLARKTGLS GGWKKFAVDH NLVDGDALVF QLITPTVFKV FITRVDTETS TIEESMPQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083863.1 | 1e-121 | B3 domain-containing protein At5g42700 | ||||
Refseq | XP_011083864.1 | 1e-121 | B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A1J6IHH1 | 1e-94 | A0A1J6IHH1_NICAT; B3 domain-containing protein | ||||
STRING | XP_009783454.1 | 5e-95 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1628 | 23 | 71 |