PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100268870121
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 121aa    MW: 14205.3 Da    PI: 8.6555
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100268870121genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding65.87.7e-213076148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+W++eEd+ ++++v+++G++ W+tIa++++ gR +kqc++rw+++l
  Ote100268870121|100268870121 30 KGPWSKEEDDVIIELVNKYGPKKWSTIANHLP-GRIGKQCRERWHNHL 76
                                  79******************************.*************97 PP
2Myb_DNA-binding27.48.1e-0982120141
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 
                                   + +WT++E++ l++a++  G++ W+   + ++ gR  ++++
  Ote100268870121|100268870121  82 KEAWTQDEELTLIRAHQVIGNK-WAELTKFLP-GRYMNSLV 120
                                   579*******************.*********.**988886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500903.973124IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-11636IPR009057Homeodomain-like
PROSITE profilePS5129433.1432580IPR017930Myb domain
SuperFamilySSF466891.37E-2827118IPR009057Homeodomain-like
SMARTSM007171.5E-182978IPR001005SANT/Myb domain
PfamPF002491.7E-193076IPR001005SANT/Myb domain
CDDcd001672.18E-153276No hitNo description
Gene3DG3DSA:1.10.10.601.1E-283783IPR009057Homeodomain-like
PROSITE profilePS512948.27681121IPR017930Myb domain
SMARTSM007171.281121IPR001005SANT/Myb domain
PfamPF002493.2E-782119IPR001005SANT/Myb domain
CDDcd001670.0039384121No hitNo description
Gene3DG3DSA:1.10.10.601.4E-1384118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MICSAECFKD RTDVQCLHRW QKVLNPDLVK GPWSKEEDDV IIELVNKYGP KKWSTIANHL  60
PGRIGKQCRE RWHNHLNPNI NKEAWTQDEE LTLIRAHQVI GNKWAELTKF LPGRYMNSLV  120
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-54511933147MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-54511933147MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027085372.11e-71transcription factor MYB3R-1-like isoform X1
SwissprotQ9S7G71e-67MB3R1_ARATH; Transcription factor MYB3R-1
TrEMBLA0A4D8YDK16e-71A0A4D8YDK1_SALSN; Uncharacterized protein
TrEMBLA0A4D8ZV105e-74A0A4D8ZV10_SALSN; Uncharacterized protein
TrEMBLA0A4D9B4928e-71A0A4D9B492_SALSN; Uncharacterized protein
STRINGevm.model.supercontig_78.762e-70(Carica papaya)
STRINGXP_010100271.12e-70(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103932025
Publications ? help Back to Top
  1. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]