 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Ote100266090001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
| Family |
C2H2 |
| Protein Properties |
Length: 195aa MW: 22224.1 Da PI: 11.1678 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ote100266090001 | genome | OteDB | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 17.3 | 1.3e-05 | 158 | 180 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC +C+k + +s+ k H++t+
Ote100266090001|100266090001 158 WKCDKCSKKYAVQSDWKAHQKTC 180
58*******************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 195 aa
Download sequence Send
to blast |
MVLVLRVDQR PKALAVERLE VARDLKNFGK TRILEIARAR RSLPTRKVMK GVSLLVKSSX 60
XXXXXXLLQN QSNSISTNSH GSSASKQQQP PPKKKRNLPG TPGHNLPWKL RQRTTSEVKK 120
RVYICPEPTC VHHNPARALG DLTGIKKHFS RKHGEKKWKC DKCSKKYAVQ SDWKAHQKTC 180
GTREYKCDCG TIFSR
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |
