PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100265130031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | C3H | ||||||||
Protein Properties | Length: 331aa MW: 37216.1 Da PI: 8.6689 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.2 | 2.5e-12 | 223 | 248 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ Ote100265130031|100265130031 223 YQPDICKDYKETGYCGYGDSCKFMHD 248 67789********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.96E-9 | 221 | 253 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 222 | 250 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-7 | 222 | 249 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-12 | 223 | 253 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-10 | 223 | 248 | IPR000571 | Zinc finger, CCCH-type |
CDD | cd00162 | 3.54E-5 | 275 | 312 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 2.0E-9 | 275 | 312 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 7.34E-8 | 276 | 312 | No hit | No description |
Pfam | PF13920 | 2.3E-6 | 280 | 311 | No hit | No description |
PROSITE pattern | PS00518 | 0 | 286 | 295 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MAGEAEEGGA AGEGSNGEWF VTLIIPLAYL ILMYTDLLKF LHGSVSALEL LEFVKPSKGK 60 NIRKRTAVEE AEDEEDSKSG SAVVYNKKKQ SAADNKLHFS SGPLKTFKES EAEKQKASVF 120 EYESSRVIQV QNDSKATATL ETETEFSKDA RAIRERVLKQ AEEALKGKNK SAGDEKLYKG 180 LHGYTDYKAG FRREQTVASE KAGGSHGPLR ASAHIRVSAR FDYQPDICKD YKETGYCGYG 240 DSCKFMHDRG DYKSGWQLEK EWDEKEKARA RKMAMRPFVD PVVTKCKHYF CEHCALKHHA 300 KNKKCFVCNE PTLGIFNTAF EIRKRMAAEG K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 8e-54 | 44 | 322 | 10 | 313 | RING finger protein 113A |
5z58_M | 8e-54 | 44 | 322 | 10 | 313 | RING finger protein 113A |
6ff4_t | 8e-54 | 44 | 322 | 10 | 313 | RING finger protein 113A |
6ff7_t | 8e-54 | 44 | 322 | 10 | 313 | RING finger protein 113A |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012843831.1 | 1e-172 | PREDICTED: zinc finger CCCH domain-containing protein 1 | ||||
Swissprot | Q8GX84 | 1e-147 | C3H1_ARATH; Zinc finger CCCH domain-containing protein 1 | ||||
TrEMBL | A0A4D9ASS5 | 1e-180 | A0A4D9ASS5_SALSN; RING finger protein 113A | ||||
STRING | Migut.B01852.1.p | 1e-171 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4403 | 23 | 37 |