PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100261430121
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family E2F/DP
Protein Properties Length: 336aa    MW: 37066.6 Da    PI: 7.1663
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100261430121genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.41.1e-2763145271
                       E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekn 65 
                                   ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+
  Ote100261430121|100261430121  63 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdpsnslatpdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKK 139
                                   689********...*****999*******************************************************.*** PP

                       E2F_TDP  66 eirwkg 71 
                                   ei+wkg
  Ote100261430121|100261430121 140 EIQWKG 145
                                   ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-4658150IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.8E-3562145IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.9E-2564145IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.63E-2165146IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144583.08E-36150272IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.36E-34151281No hitNo description
SMARTSM011383.6E-57152333IPR014889Transcription factor DP, C-terminal
PfamPF087816.7E-18153216IPR014889Transcription factor DP, C-terminal
PfamPF087811.0E-14236304IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MSTSGSVGSP SSRSEAAIAT TASDSAIMRM NNLDIQGDDA GSQGPAGNKK KKRGQRAVGG  60
DKSGRGLRQF SMKVCEKVES KGRTTYNEVA DELVAEFSDP SNSLATPDQQ QYDEKNIRRR  120
VYDALNVLMA MDIISKDKKE IQWKGLPRTS LDDIEELKSE RLGVRNRIEK KAAYLEELEE  180
QYVGLQNLVQ RNKQLYGSGN APSGGVALPF ILVQEQVTQN PTIINNLYTA LRLXXXHATV  240
EVEISEDMQL VHFDFNSTPF ELHDDNYVLK AMKVSEKTRN DGSSQSIPTD GGESSSKPKT  300
YQPQTSHPSG SNTTNRPPNS SPLPGILKAR VKHEQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-4056150193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075421.10.0transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-146DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A4D8ZRR70.0A0A4D8ZRR7_SALSN; Uncharacterized protein
STRINGXP_010241817.11e-178(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62652435