PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100258130121

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HSF

Protein Properties

Length: 311aa MW: 36075.4 Da PI: 5.2924

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100258130121	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	115.2	4e-36	16	106	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 Fl+k+y+ +ed+++++++sws+ +nsfvv+d++ fa ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++ weF+ Ote100258130121\|100258130121 16 FLSKTYDFVEDPDTDQIVSWSRGNNSFVVWDPQAFAINLLPRYFKHNNFSSFVRQLNTYGFRKVNPDK---------WEFA 87 9**************************************************************999......... PP ESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 83 hksFkkgkkellekikrkk 101 ++ F +g+k+ll++ikr+ Ote100258130121\|100258130121 88 NEGFLRGQKHLLKNIKRRX 106 ***************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	7.0E-59	12	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.36E-34	14	105	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.7E-38	14	105	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	5.8E-20	16	39	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	3.3E-32	16	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.8E-20	54	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	55	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.8E-20	67	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
NGGATREXXX XXXXPFLSKT YDFVEDPDTD QIVSWSRGNN SFVVWDPQAF AINLLPRYFK 60 HNNFSSFVRQ LNTYGFRKVN PDKWEFANEG FLRGQKHLLK NIKRRXXXXX XXXXXSSVVI 120 GGGSNQGLES CVEVGSFGLD GEIERLKRDK QVLMMELVKL RQQQQQTNSH LKQMEQRLRG 180 TEAKQQQTMS FLARAIKNPS FLQQMAQQKG KMKEIEEAIR KKRMKRIDAY GLEPQEFEIG 240 VGVDVDLEFE RLAMSSMDMG EQMLHEEDDH MHDHIHDHNL EGEKSFDEGF WGDLITEALE 300 DEIDNVLLDN P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	8e-27	16	105	20	120	Heat shock factor protein 1
5d5u_B	8e-27	16	105	29	129	Heat shock factor protein 1
5d5v_B	8e-27	16	105	29	129	Heat shock factor protein 1
5d5v_D	8e-27	16	105	29	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552814.1	1e-127	heat stress transcription factor A-2c
Swissprot	Q9LUH8	2e-99	HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBL	A0A2G9GL71	1e-124	A0A2G9GL71_9LAMI; Heat shock transcription factor
STRING	Gorai.004G076900.1	1e-108	(Gossypium raimondii)
STRING	XP_009798078.1	1e-108	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA572	24	113