PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100258130031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | HSF | ||||||||
Protein Properties | Length: 314aa MW: 36380.7 Da PI: 5.2924 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.2 | 4.1e-36 | 19 | 109 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 Fl+k+y+ +ed+++++++sws+ +nsfvv+d++ fa ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++ weF+ Ote100258130031|100258130031 19 FLSKTYDFVEDPDTDQIVSWSRGNNSFVVWDPQAFAINLLPRYFKHNNFSSFVRQLNTYGFRKVNPDK---------WEFA 90 9****************************************************************999.........**** PP ESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 83 hksFkkgkkellekikrkk 101 ++ F +g+k+ll++ikr+ Ote100258130031|100258130031 91 NEGFLRGQKHLLKNIKRRX 109 *****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 7.0E-59 | 15 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.7E-38 | 17 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.33E-34 | 17 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 5.9E-20 | 19 | 42 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.3E-32 | 19 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.9E-20 | 57 | 69 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 58 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.9E-20 | 70 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MSSNGGATRE XXXXXXXPFL SKTYDFVEDP DTDQIVSWSR GNNSFVVWDP QAFAINLLPR 60 YFKHNNFSSF VRQLNTYGFR KVNPDKWEFA NEGFLRGQKH LLKNIKRRXX XXXXXXXXSS 120 VVIGGGSNQG LESCVEVGSF GLDGEIERLK RDKQVLMMEL VKLRQQQQQT NSHLKQMEQR 180 LRGTEAKQQQ TMSFLARAIK NPSFLQQMAQ QKGKMKEIEE AIRKKRMKRI DAYGLEPQEF 240 EIGVGVDVDL EFERLAMSSM DMGEQMLHEE DDHMHDHIHD HNLEGEKSFD EGFWGDLITE 300 ALEDEIDNVL LDNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 7e-27 | 19 | 108 | 20 | 120 | Heat shock factor protein 1 |
5d5u_B | 8e-27 | 19 | 108 | 29 | 129 | Heat shock factor protein 1 |
5d5v_B | 8e-27 | 19 | 108 | 29 | 129 | Heat shock factor protein 1 |
5d5v_D | 8e-27 | 19 | 108 | 29 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020552814.1 | 1e-128 | heat stress transcription factor A-2c | ||||
Swissprot | Q9LUH8 | 1e-99 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A2G9GL71 | 1e-124 | A0A2G9GL71_9LAMI; Heat shock transcription factor | ||||
STRING | Gorai.004G076900.1 | 1e-108 | (Gossypium raimondii) | ||||
STRING | XP_009798078.1 | 1e-108 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA572 | 24 | 113 |