PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100257930091
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 586aa    MW: 66033.1 Da    PI: 6.834
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100257930091genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS399.92.6e-1222045742374
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                   ++l+++c+e +ss++ ++++++Larl elasp+g +p++Rl+ay+teALa r+a+ +++++++ +p+e +  + ++   al
  Ote100257930091|100257930091 204 ITLVVACVEQISSRNIAAIRHCLARLGELASPRGgSPLHRLIAYYTEALALRVAKLWPQIFHITAPRELD--HNENGYIAL 282
                                   6799*****************************999******************************9998..466777899 PP

                          GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetg 162
                                   +++++v+Pi++f h+t N+ Il+a+eg++rvHiiDfdi qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+el etg
  Ote100257930091|100257930091 283 RVLNQVTPIPRFIHFTSNEIILKAFEGKDRVHIIDFDIRQGLQWPSLIQSLASRANPPSHVRITGIGE----SKQELIETG 359
                                   9*******************************************************************....********* PP

                          GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvve 243
                                   +rLa + e++++pfef++ v++rled++l++L+vk+gE++aVn+v+qlh+ll ++++ +   +++L l++s ++++vv++e
  Ote100257930091|100257930091 360 DRLAVLSEAFNLPFEFHP-VVDRLEDVRLWMLHVKEGETIAVNCVFQLHKLLYDDTKRAL--KDFLGLIRSAKADIVVMAE 437
                                   ******************.7********************************88887777..9****************** PP

                          GRAS 244 qeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324
                                   qe  h+++++  r++++l+yy+a+fds++ +lp es +rik+E++ +gre++n+ aceg+er+erhet+ekW+  +ee+GF
  Ote100257930091|100257930091 438 QEGAHDEPTLDGRLVSSLKYYAAIFDSIDLSLPLESAARIKMEEM-FGREVRNIMACEGRERVERHETFEKWQVLMEESGF 517
                                   *********************************************.*********************************** PP

                          GRAS 325 kpvplsekaakqaklllrkvk.sdgyrveee......sgslvlgWkdrpLvsvSaWr 374
                                   +  ++se+++ q + ++++++ +  yrve++      s +l+l  +++pL++vSaW+
  Ote100257930091|100257930091 518 RCREVSERETLQGQIMVKMYSsNVDYRVEKKevefssSSALILSLSEQPLYAVSAWK 574
                                   *********************8777****6667777688999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.959177547IPR005202Transcription factor GRAS
PfamPF035148.9E-120204574IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MLAGCPSTLI SPRHRLRSEP SSTQFQTCHV PKMSTQRLDL PRSFGLKDSA RPQPVRPVGI  60
TVDKPIGSKG VSGCSLKSRR ENRDEFKSLK KRYAAQEISY DEGPNYMSRV KRKRGNGNEG  120
LGQFSSEGFW FHEGEEVVAP PPLPPLSNIP WFDSVVTEIT DFGKSKNVET IKGEASGSSS  180
TSSGVAKNGE NNNGYKEHEY MEMITLVVAC VEQISSRNIA AIRHCLARLG ELASPRGGSP  240
LHRLIAYYTE ALALRVAKLW PQIFHITAPR ELDHNENGYI ALRVLNQVTP IPRFIHFTSN  300
EIILKAFEGK DRVHIIDFDI RQGLQWPSLI QSLASRANPP SHVRITGIGE SKQELIETGD  360
RLAVLSEAFN LPFEFHPVVD RLEDVRLWML HVKEGETIAV NCVFQLHKLL YDDTKRALKD  420
FLGLIRSAKA DIVVMAEQEG AHDEPTLDGR LVSSLKYYAA IFDSIDLSLP LESAARIKME  480
EMFGREVRNI MACEGRERVE RHETFEKWQV LMEESGFRCR EVSERETLQG QIMVKMYSSN  540
VDYRVEKKEV EFSSSSALIL SLSEQPLYAV SAWKPASDDD ERSVQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5621057726382Protein SCARECROW
5b3h_A9e-5721057725381Protein SCARECROW
5b3h_D9e-5721057725381Protein SCARECROW
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Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072178.10.0scarecrow-like protein 28
SwissprotQ9CAN31e-176SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A2G9H0900.0A0A2G9H090_9LAMI; Uncharacterized protein
STRINGEOY246320.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55682434