PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100254230031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 810aa    MW: 88909 Da    PI: 5.8788
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100254230031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.2e-18563357
                                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                      Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                  k  ++t+eq+e+Le++++++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  Ote100254230031|100254230031  5 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRDCpilaNIEPKQIKVWFQNRRCREKQ 63
                                  6789*****************************************************97 PP
2START155.83.4e-491303352203
                                   HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEE CS
                         START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetl 82 
                                   +aee+++e++ ka+ ++ +Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++ 
  Ote100254230031|100254230031 130 IAEETLTEFLGKATGTAVNWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRLSWFRDCRCLDVA 209
                                   6899******************************************************.8999999999************ PP

                                   EEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEEEC CS
                         START  83 evissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe..sssvvRaellpSgiliepks 158
                                     i +g  g+++l +++ +a+++l++ Rdf+++Ry+ +l++g+++i+++S++s +  p+  s  ++Rae+lpSg+li+p++
  Ote100254230031|100254230031 210 SSIPTGngGIIELVYMQVYAPTTLASaRDFWTLRYTTSLEDGSLLICERSLTSSTGGPTgpSTCFIRAEMLPSGYLIRPCE 290
                                   **********************************************************999999***************** PP

                                   TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXX CS
                         START 159 nghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrq 203
                                   +g+s +++v+h+d ++ +++++lr+l++s+ + ++k+++a l++ 
  Ote100254230031|100254230031 291 GGGSIIHIVDHIDFDACSVPEVLRPLYESSKILAQKMTMASLRHI 335
                                   ****************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.435164IPR001356Homeobox domain
SMARTSM003895.0E-15268IPR001356Homeobox domain
CDDcd000865.67E-16565No hitNo description
PfamPF000465.4E-16563IPR001356Homeobox domain
SuperFamilySSF466896.84E-16667IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-18763IPR009057Homeodomain-like
PROSITE profilePS5084823.525120347IPR002913START domain
CDDcd088757.60E-66124339No hitNo description
Gene3DG3DSA:3.30.530.202.6E-18128333IPR023393START-like domain
SMARTSM002341.2E-42129338IPR002913START domain
SuperFamilySSF559611.35E-32130340No hitNo description
PfamPF018521.4E-46130336IPR002913START domain
PfamPF086708.2E-43663809IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MDASKYVRYT PEQVEALERV YAECPKPSSL RRQQLIRDCP ILANIEPKQI KVWFQNRRCR  60
EKQRKEASRL QTVSHLVYEN GYMRQQLHTV SSTTDTSCDS VVMSGQQQQQ NPTPQHTQRD  120
TNSPAGLLAI AEETLTEFLG KATGTAVNWV QMIGMKPGPD SIGIVAVSRN CSGVAARACG  180
LVSLEPTKVA EILKDRLSWF RDCRCLDVAS SIPTGNGGII ELVYMQVYAP TTLASARDFW  240
TLRYTTSLED GSLLICERSL TSSTGGPTGP STCFIRAEML PSGYLIRPCE GGGSIIHIVD  300
HIDFDACSVP EVLRPLYESS KILAQKMTMA SLRHIRQIAQ ETNGEIQYSG GRQPAVLRAL  360
SQRLCRGFND AVNGFVDDGW SIMASDGVED VTIAVNSSPS KFLGSQYNNL SMLPTFGGVL  420
CARASMLLQN VPPALLVRFL REHRSEWADY GVDVYCAASL KSSPYAVPCS KPGGFPSSQV  480
ILPLAQTVEH EEFLEVVRLE GHTFSPEEIA LSRDMYLLQL CSGVDETSFG ACAQLVFAPI  540
DESFGDDAPL LPSGFRVIPL EPKSDDPAAT RTLDLASALE VGHSGGRAAG EADTGSQNFR  600
SVLTMAFQFT FENHYKDSVA VMARQYIRSI VASVQRVAMA IAPSQLGSQM ALKLHPGSLE  660
AVTLAQWICR SYSVHTGGEL FRTDVSLAGD AVLKQLWHHS DAIMCCSVKM NASAVFTFAN  720
QXXXXXXLET TLVALQDIML EKILDESGRK VLLSEFSKIM QQGFAYLPAG MCVSSMGRTV  780
SYEQAVAWKV LNDDDANHCL AFMFMNWSFM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096678.10.0homeobox-leucine zipper protein ATHB-14 isoform X2
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A4D9B1U80.0A0A4D9B1U8_SALSN; Homeobox-leucine zipper protein
STRINGXP_009777911.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]