PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100253380021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

C3H

Protein Properties

Length: 402aa MW: 44204.6 Da PI: 7.8154

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100253380021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.1	1.1e-06	35	51	11	26
GTS.--TTTTT-SS-SS CS zf-CCCH 11 rtG.tCkyGdrCkFaHg 26 r+G C+yG+rC F+H+ Ote100253380021\|100253380021 35 RSGeRCRYGNRCEFIHP 51 56779***********8 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005635	Cellular Component	nuclear envelope

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MLSLVKYSVM RFLGFEGDND YIGNLEVKWG RVSGRSGERC RYGNRCEFIH PNPQQTQTNP 60 FGFGNQTGAQ IQDTRQPVSN PFGFGSKSNQ PKPFENKWSR FSPLNNASTS RQPDNKPQAA 120 SHKCTDPQSC KQMIQADLKN EEEKPLWKLT CYGHSQNGPC DITGDISYDE LRALAYDDYK 180 NGKSLEAIVE RERNLLASKL IEFQNLREPH TVSSAPIPSS QKFFAGGNTN APNINNGFST 240 QVSSFSQLSG SLKTRSAAVP NYSFGQASAF QNNSQPSGLF QTNNSSFNSS GISGSQPQQF 300 IQSAFPFGTS RPTSGGESPQ QNPFSTLGNS LLTGNGVNKQ FNFFSNEPSL ASNTIGHSTS 360 SIQAIDIPKE NTNADGSVWT KSEWKWNAAE IPEEAPPDIY IR

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MLSLVKYSVM RFLGFEGDND YIGNLEVKWG RVSGRSGERC RYGNRCEFIH PNPQQTQTNP  60
FGFGNQTGAQ IQDTRQPVSN PFGFGSKSNQ PKPFENKWSR FSPLNNASTS RQPDNKPQAA  120
SHKCTDPQSC KQMIQADLKN EEEKPLWKLT CYGHSQNGPC DITGDISYDE LRALAYDDYK  180
NGKSLEAIVE RERNLLASKL IEFQNLREPH TVSSAPIPSS QKFFAGGNTN APNINNGFST  240
QVSSFSQLSG SLKTRSAAVP NYSFGQASAF QNNSQPSGLF QTNNSSFNSS GISGSQPQQF  300
IQSAFPFGTS RPTSGGESPQ QNPFSTLGNS LLTGNGVNKQ FNFFSNEPSL ASNTIGHSTS  360
SIQAIDIPKE NTNADGSVWT KSEWKWNAAE IPEEAPPDIY IR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078165.1	1e-135	zinc finger CCCH domain-containing protein 46 isoform X2
TrEMBL	A0A4D8YYV6	1e-112	A0A4D8YYV6_SALSN; Nucleoporin-like protein 2

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9439	20	22