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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100252780031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB_related | ||||||||
Protein Properties | Length: 120aa MW: 13672.2 Da PI: 4.6825 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.4 | 4.5e-10 | 29 | 70 | 4 | 44 |
S-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrw 44 WT+eEd+ + +a +++ ++ W++Ia ++ g+t +++k ++ Ote100252780031|100252780031 29 WTKEEDKAFENALAKYFNDadMWDKIALAVP-GKTIEDLKIHY 70 *******************************.********999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 4.8E-5 | 25 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-6 | 25 | 75 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.51E-9 | 26 | 84 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.2E-8 | 28 | 70 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.655 | 29 | 74 | IPR017877 | Myb-like domain |
CDD | cd00167 | 3.18E-8 | 29 | 70 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MDADLTFSSC SWPMEGATAS KNTCTDPYWT KEEDKAFENA LAKYFNDADM WDKIALAVPG 60 KTIEDLKIHY EASIDNVVTI ESCKVPLPSY RSKVSGQKER LSPEHREQAR GTPWTEEEHR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-14 | 29 | 92 | 11 | 75 | RADIALIS |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012853388.1 | 2e-31 | PREDICTED: transcription factor DIVARICATA-like | ||||
TrEMBL | A0A2G9H9E6 | 1e-38 | A0A2G9H9E6_9LAMI; Zuotin | ||||
STRING | Migut.N03245.1.p | 7e-31 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15159 | 4 | 6 |