PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100248710081

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LSD

Protein Properties

Length: 383aa MW: 41460.2 Da PI: 4.3986

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100248710081	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	36.7	6.8e-12	327	351	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC lL+YP GAp+V+C++C +V Ote100248710081\|100248710081 327 CGGCTLLLMYPHGAPAVQCSSCRFV 351 **********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	2.3E-9	324	352	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	6.4E-10	327	351	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MEEVSMVEGD KQEIEXXXXX XXXXXXXXXX XXXXGPPPGF QRIITPLTVP ASENGETAAD 60 SEEDDGPPPG FDCIAPKPLQ SLPSSASSDL TSSKQDDMDD DEDGPPPGWE FSKLVNALPI 120 ETSNTPDVKE EGDEELDEGP PPGWESALPC QMPQPQTPPL QPQSTVSSNI EIGSKEITPK 180 DDNEMPHSES EQTPMTGQSS PATPPPQQLP ASEQPADSVC ATHIDAGNKD EDKKNEERRP 240 TPGHQTVSPL QQLPSNPQPS TPVPKLSSSG KKSSASLWYL PEAVCVSTRN KMDSMSRMPG 300 SKLCSRSVFI NGLNEPCAAH EVGQVKCGGC TLLLMYPHGA PAVQCSSCRF VTEIGAHNRR 360 PPLSVQQAQA RDRRRQRCSN RSR

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MEEVSMVEGD KQEIEXXXXX XXXXXXXXXX XXXXGPPPGF QRIITPLTVP ASENGETAAD  60
SEEDDGPPPG FDCIAPKPLQ SLPSSASSDL TSSKQDDMDD DEDGPPPGWE FSKLVNALPI  120
ETSNTPDVKE EGDEELDEGP PPGWESALPC QMPQPQTPPL QPQSTVSSNI EIGSKEITPK  180
DDNEMPHSES EQTPMTGQSS PATPPPQQLP ASEQPADSVC ATHIDAGNKD EDKKNEERRP  240
TPGHQTVSPL QQLPSNPQPS TPVPKLSSSG KKSSASLWYL PEAVCVSTRN KMDSMSRMPG  300
SKLCSRSVFI NGLNEPCAAH EVGQVKCGGC TLLLMYPHGA PAVQCSSCRF VTEIGAHNRR  360
PPLSVQQAQA RDRRRQRCSN RSR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012830377.1	5e-69	PREDICTED: formin-like protein 3 isoform X1
TrEMBL	A0A4D9B3X2	3e-83	A0A4D9B3X2_SALSN; Uncharacterized protein
STRING	Migut.H01490.1.p	2e-68	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11642	22	23