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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100247360041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | WRKY | ||||||||
Protein Properties | Length: 226aa MW: 25232.2 Da PI: 8.5612 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.8 | 2e-32 | 146 | 203 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fpr+YY+Cts++C vkk +ers++dp++v++tY g+Hnh+ Ote100247360041|100247360041 146 EDGYRWRKYGQKAVKNSPFPRNYYKCTSQKCGVKKLIERSSKDPSLVITTYIGKHNHH 203 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.4E-33 | 130 | 205 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.66E-28 | 138 | 205 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.813 | 140 | 205 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.2E-37 | 145 | 204 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.2E-25 | 146 | 203 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MGSDQGFQDS FMAAYNYDFT PSMYYLQQPL QNPRGIFDMS SFFHGGYNPP QHALDQPIFA 60 DIYSNKNVGE DNSIAAQIIP PMTPNPSPSF EAGEEEDSSM GDQKGSVCEE GGDLKSNKVK 120 EKKKEEKRPR EARFAFVTKS GVDNLEDGYR WRKYGQKAVK NSPFPRNYYK CTSQKCGVKK 180 LIERSSKDPS LVITTYIGKH NHHSPATLRG SAAASSVCIA QFSLKT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-28 | 138 | 206 | 10 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 8e-28 | 138 | 206 | 10 | 78 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098088.1 | 3e-54 | probable WRKY transcription factor 71 isoform X1 | ||||
Swissprot | Q93WV4 | 8e-42 | WRK71_ARATH; WRKY transcription factor 71 | ||||
TrEMBL | A0A4D9AJT9 | 4e-68 | A0A4D9AJT9_SALSN; Uncharacterized protein | ||||
STRING | Migut.M00487.1.p | 1e-52 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1485 | 24 | 75 |
Publications ? help Back to Top | |||
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