PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100246140061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 162aa    MW: 18666.8 Da    PI: 4.4608
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100246140061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.49.2e-101055646
                                  HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
               Myb_DNA-binding  6 teEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                                   eE e l d+v+q+G g+W++I +        ++Rt  q++ +w+ 
  Ote100246140061|100246140061 10 VEELEALRDGVEQHGAGNWHAILSDSElapffQNRTTTQLQTKWRH 55
                                  69******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.185161IPR017930Myb domain
CDDcd116604.96E-13957No hitNo description
SuperFamilySSF466895.95E-11967IPR009057Homeodomain-like
PfamPF002492.1E-6954IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-101058IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.104.4E-688148IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.97E-689150IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MSKRITYRSV EELEALRDGV EQHGAGNWHA ILSDSELAPF FQNRTTTQLQ TKWRHILAWQ  60
WGSGGNTDDS MTPTSEAQII SSFGSTNSNI PDYDTMIIEA LEFPEDPRGS QINTIAALIK  120
QRHEVPENMT ELLDPELMRL VHENRLDKDN EDFYRINILY PF