PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100245040011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

Trihelix

Protein Properties

Length: 418aa MW: 47428.8 Da PI: 6.2642

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100245040011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.8	3.9e-30	78	163	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ ++++ Ote100245040011\|100245040011 78 RWPRQETLTLLEIRSKLDPKFKEANQKGPLWDEVSRIMsEEHGYKRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYR 156 8***********************************999*************************98..55667 PP trihelix 81 yfdqlea 87 +f+qlea Ote100245040011\|100245040011 157 FFRQLEA 163 *****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0021	75	138	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.039	77	136	IPR017877	Myb-like domain
Pfam	PF13837	1.9E-20	78	164	No hit	No description
CDD	cd12203	1.32E-20	78	143	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MEDEYGMADL RQYMGSRPLF PSPELLSTXX XXXXXXXXXQ SYDMLIFRSD SAAAAANNAS 60 SSATAAKGFS GFDGGAGRWP RQETLTLLEI RSKLDPKFKE ANQKGPLWDE VSRIMSEEHG 120 YKRSGKKCRE KFENLYKYYK KTKEGKAGRQ DGKHYRFFRQ LEALYGEANN APSMSETHAY 180 NHPTNFSNSL SLSNYSVNDS GTSDGGADGG ETARIKDAID AQMKKLMDRQ EAWMEKMMTT 240 IXXXXXXXXX XXXXXXXXXX XXXXXXQKFW ANERAWIEAR DAALMEALRK LTSKESSSND 300 DGSETECEIN RLIQLRAAIE GKLQQRGVEE EIMWEEIAAK EINNYALKCS KKKRENSNHG 360 EGGFINYCDI SEQRNNEDHH HIISLSHDNG SSSLPNLNTG AISESCFRYF MGDAYGRI

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MEDEYGMADL RQYMGSRPLF PSPELLSTXX XXXXXXXXXQ SYDMLIFRSD SAAAAANNAS  60
SSATAAKGFS GFDGGAGRWP RQETLTLLEI RSKLDPKFKE ANQKGPLWDE VSRIMSEEHG  120
YKRSGKKCRE KFENLYKYYK KTKEGKAGRQ DGKHYRFFRQ LEALYGEANN APSMSETHAY  180
NHPTNFSNSL SLSNYSVNDS GTSDGGADGG ETARIKDAID AQMKKLMDRQ EAWMEKMMTT  240
IXXXXXXXXX XXXXXXXXXX XXXXXXQKFW ANERAWIEAR DAALMEALRK LTSKESSSND  300
DGSETECEIN RLIQLRAAIE GKLQQRGVEE EIMWEEIAAK EINNYALKCS KKKRENSNHG  360
EGGFINYCDI SEQRNNEDHH HIISLSHDNG SSSLPNLNTG AISESCFRYF MGDAYGRI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094408.1	1e-136	trihelix transcription factor PTL
Swissprot	Q9LZS0	3e-75	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A2G9G8M2	1e-143	A0A2G9G8M2_9LAMI; Transcription factor GT-2
STRING	Migut.J00979.1.p	1e-112	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3063	24	51

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]