PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100244960021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 329aa    MW: 36966.8 Da    PI: 8.3081
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100244960021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.12e-3474130259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpv+kkvers  d++++ei+Y+g+Hnh 
  Ote100244960021|100244960021  74 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVTKKVERSL-DGQITEIIYKGQHNHA 130
                                   8****************************************.***************7 PP
2WRKY104.27.3e-33228286159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYGqK+vkg+++prsYY+Cts gC+v+k+ver+a+d k+v++tYeg+Hnh+
  Ote100244960021|100244960021 228 LDDGYRWRKYGQKVVKGNPYPRSYYKCTSGGCNVRKHVERAASDRKAVITTYEGKHNHD 286
                                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-3069132IPR003657WRKY domain
SuperFamilySSF1182907.32E-2772132IPR003657WRKY domain
PROSITE profilePS5081123.06673132IPR003657WRKY domain
SMARTSM007747.9E-3973131IPR003657WRKY domain
PfamPF031067.1E-2774129IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.8E-37214288IPR003657WRKY domain
SuperFamilySSF1182902.88E-29220288IPR003657WRKY domain
PROSITE profilePS5081138.262223288IPR003657WRKY domain
SMARTSM007742.8E-37228287IPR003657WRKY domain
PfamPF031061.6E-25229286IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSHQQMLDQI SGEAQGQAHL QIQYPSFSSS ISHLRPLPSN ASLQQHIPPP KIIKDSPDFS  60
EPHQKSQPLD KPIDDGYNWR KYGQKQVKGS EFPRSYYKCT HPNCPVTKKV ERSLDGQITE  120
IIYKGQHNHA QPSKRVKDNG NSQSNQPQVG GPYLSNAQDQ GSNQLTPEQV SGSSDSEEVA  180
AVETRVDDGD EDEPEPKRRN IEVQQASSHR TVMEPRIIVQ TTSEVDLLDD GYRWRKYGQK  240
VVKGNPYPRS YYKCTSGGCN VRKHVERAAS DRKAVITTYE GKHNHDVPAA KNSTHRPQNI  300
AANRGGGMEY ANDQQQAVAL LRFKEEQIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-4173289878Probable WRKY transcription factor 4
2lex_A3e-4173289878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070970.11e-164probable WRKY transcription factor 3 isoform X2
SwissprotQ9ZQ701e-121WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A0D5YA371e-164A0A0D5YA37_SALMI; WRKY protein
STRINGXP_009794188.11e-140(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41072445
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]