PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100243530121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | NF-YB | ||||||||
Protein Properties | Length: 202aa MW: 22191 Da PI: 5.7544 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 85.2 | 7.6e-27 | 24 | 72 | 1 | 49 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse 49 +reqdrflPian++rimkk+lPan+ki+kdak+tvqecvsefisfvtse Ote100243530121|100243530121 24 MREQDRFLPIANIGRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSE 72 59*********************************************99 PP | |||||||
2 | NF-YB | 73.8 | 2.6e-23 | 111 | 157 | 49 | 95 |
NF-YB 49 easdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 asdkcq+ekrktingddllwa+atlGfe+y++plk+yl++yre ++ Ote100243530121|100243530121 111 GASDKCQKEKRKTINGDDLLWAMATLGFEEYINPLKTYLARYREGDT 157 69*****************************************9665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 4.59E-16 | 18 | 72 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 3.1E-24 | 19 | 72 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.0E-16 | 30 | 72 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 4.9E-17 | 58 | 76 | No hit | No description |
SuperFamily | SSF47113 | 1.68E-15 | 107 | 160 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.7E-5 | 109 | 133 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 3.0E-20 | 111 | 182 | IPR009072 | Histone-fold |
PRINTS | PR00615 | 4.9E-17 | 116 | 134 | No hit | No description |
PRINTS | PR00615 | 4.9E-17 | 135 | 153 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MADSPGGHGS HENGGGDQSP RSSMREQDRF LPIANIGRIM KKALPANGKI AKDAKDTVQE 60 CVSEFISFVT SEYICKELIA YILYTSAMYL LDWLRVGILY SKILPFHFYQ GASDKCQKEK 120 RKTINGDDLL WAMATLGFEE YINPLKTYLA RYREGDTKGS VRGADGAAKK DTAGTQLGPD 180 AQSAFDDESD FSGALASCST YL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_B | 4e-38 | 23 | 154 | 2 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 4e-38 | 23 | 154 | 2 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077038.1 | 4e-74 | nuclear transcription factor Y subunit B-1 | ||||
Refseq | XP_020548913.1 | 4e-74 | nuclear transcription factor Y subunit B-1 | ||||
Swissprot | Q8VYK4 | 2e-64 | NFYB8_ARATH; Nuclear transcription factor Y subunit B-8 | ||||
TrEMBL | A0A0N6X6V5 | 4e-79 | A0A0N6X6V5_SALMI; Transcription factor NFYB | ||||
STRING | VIT_13s0019g03600.t01 | 6e-72 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Publications ? help Back to Top | |||
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