PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100240970071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 345aa    MW: 38881.6 Da    PI: 8.8718
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100240970071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.4e-08165188225
                                   -S---SGGGGTS--TTTTT-SS-S CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                                   k+++C+ ++ + +C+yGd+C+F H
  Ote100240970071|100240970071 165 KMKICKKYYNGEECPYGDKCNFLH 188
                                   7899******66************ PP
2zf-CCCH345.1e-11232257127
                                   --S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                   +k++lC ++   G+C++G+rC++aHg+
  Ote100240970071|100240970071 232 WKMRLCTRWEM-GQCNFGERCHYAHGQ 257
                                   89*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.315101115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-7161191IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544164191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-8165189IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-6165188IPR000571Zinc finger, CCCH-type
SMARTSM003560.032165190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-13230262IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793231258IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-7231257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-7232262IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-8232257IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MRLESPIKST MSFPDPSQQP NPFISPPYSG GDAAAYWPSF WIGAEQQQPQ PDLMPQFDRH  60
HQSKRPRISE KPQNVPPFQP PNPRINQTTN IPTNKGTSNI FYKTRICAKF MEGTCXXXXX  120
XXXXXXXXXX XXXXXXXXXX WQDLVREKER SNGGNWGDDH RMVHKMKICK KYYNGEECPY  180
GDKCNFLHQR PSPPMKQLKV EMPGQRETSA ISIGVTGDGR GNAGELDLSN GWKMRLCTRW  240
EMGQCNFGER CHYAHGQSDL RFPGSFDEGE PAATANAVSA PRKVVSASVS ALPTPSVVAA  300
APATGDGEEK RLSKWKLTKK INRIYADWLD DLTPPRGSPG KEYEL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078936.11e-136zinc finger CCCH domain-containing protein 39 isoform X1
TrEMBLA0A4D9C5W11e-141A0A4D9C5W1_SALSN; Uncharacterized protein
STRINGMigut.K00116.1.p2e-98(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65532434