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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100238740001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | GRAS | ||||||||
Protein Properties | Length: 154aa MW: 17559.8 Da PI: 6.1034 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 22.3 | 1.4e-07 | 11 | 51 | 69 | 109 |
GRAS 69 tseknsseelaalklfsevsPilkfshltaNqaIleavege 109 s +n++ ++ l f++++P+++f++ +aN a+leaveg Ote100238740001|100238740001 11 LSLNNHKFSIIELACFVDLTPWHRFGFTAANAAVLEAVEGY 51 445567777777788***********************996 PP | |||||||
2 | GRAS | 87.7 | 1.9e-27 | 54 | 153 | 230 | 330 |
GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhe 310 ++++l+P+++v+v+++ad +s++++ r+ +a +y + +d++++ lpres++r+++E+ + ++i+nv+a+eg +r+er e Ote100238740001|100238740001 54 ALRGLNPRLMVLVDEDADFTSNNLVSRLRSAYNYLWIPYDTVDTFLPRESSQRQWYEAD-ICWKIENVIAHEGPQRVERVE 133 589********************************************************.********************* PP GRAS 311 tlekWrerleeaGFkpvpls 330 ++kW +r+++aGF+ v +s Ote100238740001|100238740001 134 PKGKWVQRMRNAGFRGVGFS 153 ****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 14.718 | 1 | 154 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.0E-5 | 11 | 51 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.4E-25 | 54 | 153 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
SAVANVHAND LSLNNHKFSI IELACFVDLT PWHRFGFTAA NAAVLEAVEG YSVALRGLNP 60 RLMVLVDEDA DFTSNNLVSR LRSAYNYLWI PYDTVDTFLP RESSQRQWYE ADICWKIENV 120 IAHEGPQRVE RVEPKGKWVQ RMRNAGFRGV GFSD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022843761.1 | 1e-59 | scarecrow-like protein 32 | ||||
Swissprot | Q9SN22 | 1e-37 | SCL32_ARATH; Scarecrow-like protein 32 | ||||
TrEMBL | A0A4D9BAT4 | 4e-56 | A0A4D9BAT4_SALSN; Uncharacterized protein | ||||
STRING | VIT_07s0129g00340.t01 | 3e-56 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8781 | 24 | 29 |