PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100234000011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family Trihelix
Protein Properties Length: 373aa    MW: 40113.8 Da    PI: 9.2984
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100234000011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix28.73.5e-099514386
                      trihelix 43 ferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                                   ++s +qCk+k +nl+kryk ++++ +++   ++s++p+f+q+e
  Ote100234000011|100234000011  9 QSKSVEQCKNKVDNLKKRYKLERHRLSNG-GVATSHWPWFKQME 51
                                  47899***********************9.556679*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.0E-10953No hitNo description
Gene3DG3DSA:3.40.1160.102.2E-6192323IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B31.422107367IPR015963Uridylate kinase, bacteria
SuperFamilySSF536334.45E-47108324IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.02E-112110367No hitNo description
PfamPF006961.6E-21111320IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MVSERCENQS KSVEQCKNKV DNLKKRYKLE RHRLSNGGVA TSHWPWFKQM EQIVGNSLAA  60
KAAAEEEKSA GASGASYSTR QAKRLGTVTS SPSSQVNSMK MKPTNNLRWR RVVLKISGAA  120
LAGSAPNNIE PKVAMLIARE VSIACHVGVE VAIVVGGRNF FCGDTWVEQT GLDRCTAYQI  180
GMMATVMNSV LLQSALEKLG VQTRVQSAFS MPEVAEPYSR QRAIRHLEKG RVVIFGGIGA  240
GTGNPLFSTD TAAALRASEI HADAVLKGTN MEGIYVCDSR NNSIGGEHIS FRELASRGAS  300
PMDMMAVTFC EENGIPGAIF KYSSFAISLS FASNKTLTST AVGIFNLHEP GNISRALCGE  360
RVGTLIDQTG PVC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A3e-571053665239Uridylate kinase
3ek5_B3e-571053665239Uridylate kinase
3ek5_C3e-571053665239Uridylate kinase
3ek5_D3e-571053665239Uridylate kinase
3ek5_E3e-571053665239Uridylate kinase
3ek5_F3e-571053665239Uridylate kinase
3ek6_A3e-571053665239Uridylate kinase
3ek6_B3e-571053665239Uridylate kinase
3ek6_C3e-571053665239Uridylate kinase
3ek6_D3e-571053665239Uridylate kinase
3ek6_E3e-571053665239Uridylate kinase
3ek6_F3e-571053665239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101478.10.0uncharacterized protein LOC105179524
TrEMBLA0A4D9AKP20.0A0A4D9AKP2_SALSN; Uridylate kinase
STRINGMigut.L01743.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87282427