PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100229640091 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 511aa MW: 56853.2 Da PI: 6.5144 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.6 | 1.9e-31 | 201 | 258 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkve++ +++++ei+Y+g+Hnh+k Ote100229640091|100229640091 201 DDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVECNL-EGHITEIVYKGSHNHSK 258 8****************************************.***************85 PP | |||||||
2 | WRKY | 54.5 | 2.4e-17 | 372 | 409 | 22 | 59 |
EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 rsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+ Ote100229640091|100229640091 372 RSYYKCTYNGCPVRKHVERASHDLRAVITTYEGKHNHD 409 9************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-26 | 191 | 259 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.388 | 195 | 411 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-23 | 196 | 259 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.3E-33 | 200 | 258 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-23 | 201 | 256 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.84E-15 | 359 | 411 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-13 | 367 | 410 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-12 | 372 | 409 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.7E-16 | 372 | 411 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 511 aa Download sequence Send to blast |
MSASLTDLLP ANTQQQDQEE AMSQSKSRFS WGMNSELLHK NIEIPKYKSF PSSSLPLSPP 60 PVSPSSYLSI PSSLSPSHLL DSPVLFNSSN VLPSPTTGSF SVKEEEEQKY SDFSFQSQTR 120 PSNSLFSSSM DSYGRKQENG NFTSFMNKQP ELSTVETMSK PEQQQSFRHD FPIHGDSAAQ 180 QPSQMQYAQP SQYAREQKKS DDGYNWRKYG QKQVKGSENP RSYYKCTFPN CPTKKKVECN 240 LEGHITEIVY KGSHNHSKPQ STRRSSSSCL QNPVYNNIAM QSQSSSSLLE NEQMDIVTTP 300 ENSSASFGDD DFEQGSSMSN SRLDDENEPE AKRWKGENES EGVSASGSRT VRKPRIVVQT 360 TSDIDILDDG YRSYYKCTYN GCPVRKHVER ASHDLRAVIT TYEGKHNHDV PAARGSGGYA 420 PAGPQATTTN VAPTAIRPSV MSNGMNYPNP ARMQTMQNQT PYTLQMLHDN NGYAFSSFGN 480 SVGAPYSNTD NSLSTAKQEP KDNPFYDSFL S |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-20 | 201 | 412 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-20 | 201 | 412 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-TTGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Involved in defense responses. Required for resistance to the necrotrophic fungal pathogen B.cinerea (PubMed:17059405, PubMed:21990940). Regulates the antagonistic relationship between defense pathways mediating responses to the bacterial pathogen P. syringae and the necrotrophic pathogen B.cinerea (PubMed:17059405). Required for the phytoalexin camalexin synthesis following infection with B.cinerea. Acts as positive regulator of the camalexin biosynthetic genes PAD3 (CYP71B15) and CYP71A13 by binding to their promoters (PubMed:21498677, PubMed:22392279). Acts downstream of MPK3 and MPK6 in reprogramming the expression of camalexin biosynthetic genes, which drives the metabolic flow to camalexin production (PubMed:21498677). Functions with WRKY25 as positive regulator of salt stress response and abscisic acid (ABA) signaling (PubMed:18839316). Functions with WRKY25 and WRKY26 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). The DNA-binding activity of WRKY33 is increased by SIB1 and SIB2 (PubMed:21990940). {ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:21336597, ECO:0000269|PubMed:21498677, ECO:0000269|PubMed:21990940, ECO:0000269|PubMed:22392279}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salt stress (PubMed:18839316). Induced by infection with the necrotrophic fungal pathogen B.cinerea (PubMed:17059405, PubMed:21498677, PubMed:21990940). Induced by infection with the bacterial pathogen P.syringae pv. tomato DC3000 (PubMed:17059405). {ECO:0000269|PubMed:17059405, ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:21498677, ECO:0000269|PubMed:21990940}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077504.1 | 0.0 | LOW QUALITY PROTEIN: probable WRKY transcription factor 33 | ||||
Swissprot | Q8S8P5 | 1e-106 | WRK33_ARATH; Probable WRKY transcription factor 33 | ||||
TrEMBL | A0A2Z7BMC7 | 0.0 | A0A2Z7BMC7_9LAMI; Putative WRKY transcription factor 26 | ||||
STRING | Migut.J00088.1.p | 1e-175 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2286 | 24 | 60 |