PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100228980001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HD-ZIP

Protein Properties

Length: 714aa MW: 78831.3 Da PI: 6.097

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100228980001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.8	4.9e-20	58	113	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e+lF+++++p+ ++r+eL ++lgL+ qVk+WFqN+R+++k Ote100228980001\|100228980001 58 KKRYHRHTQHQIQEMESLFNECPHPDDKQRKELGRRLGLEPLQVKFWFQNKRTQMK 113 688999***********************************************998 PP
2	START	191.9	3.2e-60	246	459	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqW 72 ela +a++el++ a+++ep+W +s e + ++e+ ++f+++ + ++ea+r+s+vv+m++ + + qW Ote100228980001\|100228980001 246 ELAVAAMEELIRIAQSGEPLWISSTencgELLSEEEYARTFPRGIGpkplgLQSEASRESAVVIMNHI-------NLN-QW 318 57899******************999999********999******************.......445.89 PP -TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTS CS START 73 detla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssv 142 + +a +a tlev+s+g galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+d+ ++ + + Ote100228980001\|100228980001 319 SSVFAsivsRAVTLEVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHTDGTWAVVDVSLDNLRPSS----I 395 999998888************************************************************965....8 PP EE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 143 vRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 R++++pSg+li++++ng+skvtwvehv+ ++r +h+++++lv+sgla+gak+wvatl+rqce+ Ote100228980001\|100228980001 396 SRCRRRPSGCLIQELPNGYSKVTWVEHVEIDDRAVHSIYKPLVNSGLAFGAKRWVATLDRQCER 459 ************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.18E-19	42	115	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-21	42	109	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.455	55	115	IPR001356	Homeobox domain
SMART	SM00389	3.7E-18	56	119	IPR001356	Homeobox domain
CDD	cd00086	1.71E-17	58	116	No hit	No description
Pfam	PF00046	1.1E-17	58	113	IPR001356	Homeobox domain
PROSITE profile	PS50848	42.197	237	462	IPR002913	START domain
SuperFamily	SSF55961	1.19E-31	237	461	No hit	No description
CDD	cd08875	1.03E-120	241	458	No hit	No description
SMART	SM00234	3.4E-61	246	459	IPR002913	START domain
Pfam	PF01852	2.5E-49	247	459	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	4.8E-6	339	459	IPR023393	START-like domain
SuperFamily	SSF55961	1.65E-18	481	631	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence Send to blast
MFQPNMFDSH HHLLDMAHKT PENDLDLIRD EEYESKSGTD IMEAASGDDQ DPNQRPKKKR 60 YHRHTQHQIQ EMESLFNECP HPDDKQRKEL GRRLGLEPLQ VKFWFQNKRT QMKAQHERHE 120 NTQLRNENEK LRAENIRYKE ALSNATCPNC GGPAAIGEMS FDEQHLRIEN ARLREEIDRI 180 SGIAAKYVGK PMLSYPHISP GASRSLDLGV GNFGAQTSIG GEVYGSTDLL RSVSGPTDAD 240 KPVIIELAVA AMEELIRIAQ SGEPLWISST ENCGELLSEE EYARTFPRGI GPKPLGLQSE 300 ASRESAVVIM NHINLNQWSS VFASIVSRAV TLEVLSTGVA GNYNGALQVM TAEFQVPSPL 360 VPTRENYFVR YCKQHTDGTW AVVDVSLDNL RPSSISRCRR RPSGCLIQEL PNGYSKVTWV 420 EHVEIDDRAV HSIYKPLVNS GLAFGAKRWV ATLDRQCERL ASVMANNISA GDVGVISSAD 480 GRKSMLKLAE RMVMSFCTGV GASTAHTWTT LSGSGADDVR VMTRKSMDDP GRPPGIVLSA 540 ATSFWLPVPP KRVFDFLRDE NSRSEWDILS NGGLVQEMAH IANGRDPGNS VSLLRVNSAN 600 SSQSNMLILQ ESSTDSTGSY VIYAPVDXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 660 XDGPHHDGAG IPEVGSGGSL LTVAFQILVD SVPTAKLSLG SVATVNNLIK CTVE

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence Send to blast

MFQPNMFDSH HHLLDMAHKT PENDLDLIRD EEYESKSGTD IMEAASGDDQ DPNQRPKKKR  60
YHRHTQHQIQ EMESLFNECP HPDDKQRKEL GRRLGLEPLQ VKFWFQNKRT QMKAQHERHE  120
NTQLRNENEK LRAENIRYKE ALSNATCPNC GGPAAIGEMS FDEQHLRIEN ARLREEIDRI  180
SGIAAKYVGK PMLSYPHISP GASRSLDLGV GNFGAQTSIG GEVYGSTDLL RSVSGPTDAD  240
KPVIIELAVA AMEELIRIAQ SGEPLWISST ENCGELLSEE EYARTFPRGI GPKPLGLQSE  300
ASRESAVVIM NHINLNQWSS VFASIVSRAV TLEVLSTGVA GNYNGALQVM TAEFQVPSPL  360
VPTRENYFVR YCKQHTDGTW AVVDVSLDNL RPSSISRCRR RPSGCLIQEL PNGYSKVTWV  420
EHVEIDDRAV HSIYKPLVNS GLAFGAKRWV ATLDRQCERL ASVMANNISA GDVGVISSAD  480
GRKSMLKLAE RMVMSFCTGV GASTAHTWTT LSGSGADDVR VMTRKSMDDP GRPPGIVLSA  540
ATSFWLPVPP KRVFDFLRDE NSRSEWDILS NGGLVQEMAH IANGRDPGNS VSLLRVNSAN  600
SSQSNMLILQ ESSTDSTGSY VIYAPVDXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  660
XDGPHHDGAG IPEVGSGGSL LTVAFQILVD SVPTAKLSLG SVATVNNLIK CTVE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269\|PubMed:12505995}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096101.1	0.0	homeobox-leucine zipper protein MERISTEM L1
Refseq	XP_011096102.1	0.0	homeobox-leucine zipper protein MERISTEM L1
Refseq	XP_011096103.1	0.0	homeobox-leucine zipper protein MERISTEM L1
Refseq	XP_020554106.1	0.0	homeobox-leucine zipper protein MERISTEM L1
Refseq	XP_020554107.1	0.0	homeobox-leucine zipper protein MERISTEM L1
Swissprot	Q93V99	0.0	PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBL	A0A2G9GCJ2	0.0	A0A2G9GCJ2_9LAMI; Uncharacterized protein
STRING	Migut.M01293.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA932	24	91

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]