PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100227770081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 841aa    MW: 92277.1 Da    PI: 6.9772
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100227770081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.32.3e-172582457
                                  -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                      Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                    ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q kvWFqNrR +ek+
  Ote100227770081|100227770081 25 YVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQLKVWFQNRRCREKQ 82
                                  5789****************************************************97 PP
2START153.22.2e-481633732204
                                   HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEE CS
                         START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetl 82 
                                   +aee+++e+++ka+ ++  Wv+++ +++g+ ++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W +++++ e+ 
  Ote100227770081|100227770081 163 IAEETLTEFLSKATGTAVDWVQMPGMKPGPGSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRPTWFRDCRSLEVF 242
                                   789*******************************************************.7777777777************ PP

                                   EEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEE CS
                         START  83 evissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgili 154
                                        g     + l+++  +++a+++l+p Rdf+++Ry+ +l+ g++v++++S++ +   p+    s++vRae++pSg+li
  Ote100227770081|100227770081 243 TMFPAGnggtiELLYTQCFQTYAPTTLAPaRDFWTLRYTTTLENGSLVVCERSLSGTGAGPNaaaASQFVRAETFPSGYLI 323
                                   ****9999988889999999***************************************9999999*************** PP

                                   EEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                         START 155 epksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                                   +p+++g+s +++v+h +l++++++++lr+l++s+ + ++kt+ a+l++ +
  Ote100227770081|100227770081 324 RPCDGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVLAQKTTIAALKYIR 373
                                   **********************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.8191983IPR001356Homeobox domain
SMARTSM003899.7E-142187IPR001356Homeobox domain
SuperFamilySSF466892.74E-152385IPR009057Homeodomain-like
CDDcd000866.65E-152484No hitNo description
PfamPF000465.7E-152582IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.8E-172682IPR009057Homeodomain-like
CDDcd146862.67E-576115No hitNo description
PROSITE profilePS5084825.878153384IPR002913START domain
CDDcd088757.61E-67157376No hitNo description
SMARTSM002346.3E-37162375IPR002913START domain
SuperFamilySSF559611.24E-31162377No hitNo description
Gene3DG3DSA:3.30.530.204.5E-18162358IPR023393START-like domain
PfamPF018525.9E-46163373IPR002913START domain
PfamPF086702.9E-45692825IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MAMVAQQHRE NSSGSINKHL DAGKYVRYTA EQVEALERVY AECPKPSSLR RQQLIRECPI  60
LSNIEPKQLK VWFQNRRCRE KQRKESTRLQ SVNRKLNAMN KLLMEENDRL QKQVSQLVCE  120
NGYMRQHLHT APAPATDASC ESAVTTPQHT LRDATNPAGL LSIAEETLTE FLSKATGTAV  180
DWVQMPGMKP GPGSVGIFAI SQSCSGVAAR ACGLVSLEPT KIAEILKDRP TWFRDCRSLE  240
VFTMFPAGNG GTIELLYTQC FQTYAPTTLA PARDFWTLRY TTTLENGSLV VCERSLSGTG  300
AGPNAAAASQ FVRAETFPSG YLIRPCDGGG SIIHIVDHLN LEAWSVPEVL RPLYESSKVL  360
AQKTTIAALK YIRQIAQETS GEVVYGLGRQ PAVLRTFSQR LSRGFNDAVN GFHDDGWSIL  420
NCDGAEDVVV AVNSSKNLNS GSNALPMLGG ILCAKASMLL QNVPPAVLVR FLREHRSEWA  480
DFNIDAYAAA SLKSTYAYPG MRPTKFTGSQ IIMPLGHTIE NEEMLEVIRL EGHSLSHEDA  540
FMSRDVHLLQ MCSGVDENAI GACSELVFAP IDEMFPDDAQ LLPSGFRIIP LDTKPDSLTS  600
HKTLDLTSSL EVSPATNSGK NAGGAFSARS ILTIAFQFPF ESHLQDNVAS MARQYVRSVI  660
SSVQRVAMAI SPSGLSPSAG SKLSPASPEA VTLAHWICQS YSLHTGAELL RPESTSSEAL  720
LKTLWHHQDA ILCCSLKAVP VFTFANQAGL DMLETTLVSL QDITLDKIFD DSGRKALFSE  780
FPKIMQQGFA HLPGGICMST MGRHISYEQA VVWKVFAGDE NTRSKNGLLS GWLAERRRHQ  840
W
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089294.10.0homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A4D9ALS40.0A0A4D9ALS4_SALSN; Homeobox-leucine zipper protein
STRINGMigut.D02228.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]