PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100226440061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 267aa    MW: 30419 Da    PI: 7.1986
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100226440061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY924.6e-29115173158
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                                   ++Dgy+WrKYGqK+ ++++ pr+YY+C+++ +C+vkkkv+rsa+dp++++ tYeg+Hnh
  Ote100226440061|100226440061 115 VKDGYQWRKYGQKVTRDNPSPRAYYKCSYSpTCSVKKKVQRSASDPSLLVATYEGHHNH 173
                                   58***************************99**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-28108173IPR003657WRKY domain
PROSITE profilePS5081125.89110173IPR003657WRKY domain
SuperFamilySSF1182908.89E-25112174IPR003657WRKY domain
SMARTSM007743.3E-32115175IPR003657WRKY domain
PfamPF031061.3E-23116173IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MERTSNLVLD LNAKPMHNPT ETRQNDELIE ELNRMKWENK KLDEILTGVC RNYHALSNRD  60
FGEDFFASKK RKFDDLETFN HSCCNECSSG RPREIKSNIS RVHVRIDPSE TSLIVKDGYQ  120
WRKYGQKVTR DNPSPRAYYK CSYSPTCSVK KKVQRSASDP SLLVATYEGH HNHCPSAAEA  180
QPSPVCNPAR WPEENHDPKI CSRIRDDVGA KEESEIQLQI LVEKMASSLC RNHSFKAALV  240
AAITGRILDD GSEENDDSLS NSRVFSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-211141731674Probable WRKY transcription factor 4
2lex_A7e-211141731674Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081961.12e-97probable WRKY transcription factor 40
TrEMBLA0A0D5Y9D31e-115A0A0D5Y9D3_SALMI; WRKY protein
STRINGMigut.E01464.1.p4e-82(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45002242