PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100226330051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 304aa    MW: 33807.9 Da    PI: 8.5652
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100226330051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH49.37.7e-16219244126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                   +ktelC+ +++tG C+yGd+C+FaHg
  Ote100226330051|100226330051 219 FKTELCNKWQQTGACPYGDNCQFAHG 244
                                   79***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.7E-20213251IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-11215250IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.652218246IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-10218245IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-13219244IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-8252287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-11252285IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-4256283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272256284IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MYSSISSPKQ YLSTLEYLND GSSNFSSFES EDALAPGLPQ FQQQLLNQDL VNRHRTVLLH  60
LRDMAKQAQT LRQENVNLKM TNLDLXXXXX XXXXRLNLLL NIPPIHGVDV DDPGLGNLVN  120
RLGKVNVEED GTSENEAAAK SPTSVMDSGQ GGLGGPERVH LPKSISVRSN GYLKAARAGG  180
SGQKVVKPSN QNNGTQTVYV KGGKKEQAVE LEVYNQGMFK TELCNKWQQT GACPYGDNCQ  240
FAHGVEELRP VLRHPRYKTE VCRMVLNGVP CPYGHRCHFR HTLTEQEQLT RAMNTSSGRP  300
MSYR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-22219285470Butyrate response factor 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076170.11e-126zinc finger CCCH domain-containing protein 15
RefseqXP_011076178.11e-126zinc finger CCCH domain-containing protein 15
RefseqXP_011076187.11e-126zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F55e-63C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A4D9BJ471e-141A0A4D9BJ47_SALSN; Butyrate response factor 1
STRINGMigut.L01008.1.p1e-123(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91402228