PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100224380011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 210aa MW: 24555.2 Da PI: 9.8494 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47.9 | 2.2e-15 | 74 | 134 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC........TS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl........gLterqVkvWFqNrRakek 56 ++++++eql Le+ F +++++ e++e+LA+++ rqV vWFqNrRa++k Ote100224380011|100224380011 74 KRKLSEEQLSMLERSFGSEHKLESERKERLAAEVxxxxxxxxXXXPRQVAVWFQNRRARWK 134 45899*******************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 91.7 | 8.4e-30 | 73 | 164 | 2 | 85 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLg........lqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74 +kr+ls+eq+++LE+sF +e+kLe+erK++la e+ prqvavWFqnrRAR+k+k++E++y++L++++d+ + Ote100224380011|100224380011 73 RKRKLSEEQLSMLERSFGSEHKLESERKERLAAEVXxxxxxxxxXXPRQVAVWFQNRRARWKAKKMEEEYSKLRSQLDSTV 153 8*******************************99862222222257*********************************** PP HD-ZIP_I/II 75 eenerLekeve 85 e++rLe+eve Ote100224380011|100224380011 154 VEKCRLETEVE 164 *******9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.661 | 68 | 136 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-12 | 71 | 140 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.5E-12 | 73 | 146 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.73E-9 | 73 | 137 | No hit | No description |
Pfam | PF00046 | 9.9E-13 | 74 | 134 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-15 | 75 | 143 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence Send to blast |
MNPQFDDLVS HYYPNEIITH FLPEQGNNYT EITNEKRMHA ILNLNVRAGA AEKVKVRRRR 60 RKTKGGEGGD LMRKRKLSEE QLSMLERSFG SEHKLESERK ERLAAEVXXX XXXXXXXXPR 120 QVAVWFQNRR ARWKAKKMEE EYSKLRSQLD STVVEKCRLE TEVEFAPVVR MKEQLIEAEK 180 EIQRLSEGLR SNSPASSSLS MEANVDPQFL |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099589.2 | 3e-52 | homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A2G9H3L8 | 4e-53 | A0A2G9H3L8_9LAMI; Uncharacterized protein | ||||
STRING | Solyc02g085630.2.1 | 1e-49 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |