PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100220750161
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 1062aa    MW: 117872 Da    PI: 7.2095
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100220750161genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.91.1e-10725750227
                                   -S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                   +++ C+++ rtG C++G++C+F+H+p
  Ote100220750161|100220750161 725 GEPDCSYYIRTGLCRFGPTCRFNHPP 750
                                   6899********************96 PP
2zf-CCCH31.23.8e-10779801527
                                   --SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                                   +C +++r+G+Ck+G++CkF+H++
  Ote100220750161|100220750161 779 ECAYYMRNGHCKFGSTCKFHHPQ 801
                                   6********************97 PP
3zf-CCCH37.53.9e-12925951127
                                   --S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                   +++++C+f+++tG Ck+G+ CkF+H++
  Ote100220750161|100220750161 925 PGQPECQFYMKTGDCKFGAVCKFHHPK 951
                                   5789*********************96 PP
4zf-CCCH36.67.3e-12971997127
                                   --S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                   ++++lC f++r+G+Ck+G++CkF H++
  Ote100220750161|100220750161 971 PGEPLCVFYSRYGICKFGPSCKFDHPM 997
                                   589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.493723751IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5723750IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-7725750IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-5728751IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4774800IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.033775802IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-4775801IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5778802IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-8779801IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-6924951IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483924952IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-9926951IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-5928954IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4930952IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.234970998IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7970997IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8972997IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-5973997IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 1062 aa     Download sequence    Send to blast
MPSVSLKLSN ALNDEKAGWK GSSRFHLRNF LHPSRIPHLC PLRLLYSTQG EGKPFVQDRN  60
MVKISTEAAR AQMAEADEEK LAFEQQLQRA LDARTQYFEE QADSLTLESV RRLLERDLGL  120
EKLALDAHKR FIRRCLEQKM DGADAGNSNP TTENVDKGVQ PNKEEKKPSP KQEEGMSDPE  180
KVSTGTEDTM EESPVMGVLS PKPEVGSQGS SLSESTIEKA IWERADHIQA NSEKISMAEV  240
RQLLAEDLGI AKKSLDAFRK FISQQVLQRP KSVKDVKKKG RETVKSKTKN KVYNEEGSDT  300
SQSESDEMRD ADTSQSGSDE MGDADTSQSG SAGMGDADTS QSGSDGMVDA DTSQSGSDGM  360
ADEVKSRKEA APRRNNKKLE QSKKRKISKS ADIDVSHKKQ KNGKRQKEDN NSNGDGSLSE  420
DGVSQSPIER PSLKKEKSAT GYGKRVENLK SIIKACGMSV PPSIYKKVKQ VTDDERETIL  480
VKELEGILSR EGLSKNPSEK EIKDCRKKKD RARELEGIET XXXTSYPVQE EAAEPQVLAL  540
VSIGRYFDLL KKNGLRDSDG IHEQVVKSSS EYGLGPILAR VGVDTPRENA ITPPLLLSHL  600
LSLSSPLFAR EFRQILLSAR LQLLARSCHV DLGGEFQCRE LRSPPLPVPC TIKFMRVDCV  660
NYSSIGNLLW SEEGLFGCDR VVCRYYFVSY RSVTVMLDDH CDVLWQMNMK SREQMESEPY  720
PVREGEPDCS YYIRTGLCRF GPTCRFNHPP NRKLAIAAAR MKGEYPERIG QPECQTEMEC  780
AYYMRNGHCK FGSTCKFHHP QPSNMMVSLR GSAVYPPIHS PTTSQLSFPL SRASFIASPR  840
WQSPSSYAPL VMQQGVVSVP GWNTYSGQLG SVLCSENQPP SAGNIHNDGA SPKGESGNET  900
SEFHSASVPM GYYAFQKDNV FPERPGQPEC QFYMKTGDCK FGAVCKFHHP KERLLPVPDC  960
LLSPIGLPLR PGEPLCVFYS RYGICKFGPS CKFDHPMRVF AYTTPASSST DSTAIGRFLA  1020
SSLGTVALNF SPDELVEAGS PNNRRLSLSD ARQNSDYNTD SE
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439