PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100219970071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | B3 | ||||||||
Protein Properties | Length: 169aa MW: 18207.9 Da PI: 7.4545 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 63.7 | 3e-20 | 78 | 162 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+l++s+v++ ++ lp +f+++h + ++++++le+e+g+++ +k+i +k++ l++GW++Fv n+L egD +v Ote100219970071|100219970071 78 FVKALVRSHVGSCFWMGLPVPFCKSHLPD--KDTEVILENENGEEFPIKYIANKTG----LSAGWRKFVAGNRLVEGDALV 152 89************************534..5679***************777776....********************* PP EEE-SSSEE..EEE CS B3 82 Fkldgrsefelvvk 95 F+l+g+ + +k Ote100219970071|100219970071 153 FQLTGTCR----LK 162 **987433....34 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-21 | 73 | 164 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-22 | 74 | 163 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.34E-26 | 76 | 164 | No hit | No description |
PROSITE profile | PS50863 | 12.887 | 78 | 169 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.4E-18 | 78 | 161 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-19 | 78 | 169 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MSDETIQHVY GSHGLACDEG KETMPVALQL GTPDTGGASR SKEVAKGGGL GSPVPMKSPT 60 MIRAEEFLLS LGNDQPSFVK ALVRSHVGSC FWMGLPVPFC KSHLPDKDTE VILENENGEE 120 FPIKYIANKT GLSAGWRKFV AGNRLVEGDA LVFQLTGTCR LKVRKSGMI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099150.1 | 7e-65 | B3 domain-containing protein Os01g0234100 | ||||
Swissprot | Q5KQI4 | 9e-32 | Y5814_ORYSJ; B3 domain-containing protein Os05g0481400 | ||||
TrEMBL | A0A4D9AUY2 | 3e-63 | A0A4D9AUY2_SALSN; Uncharacterized protein | ||||
STRING | Migut.K00763.1.p | 4e-57 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21774 | 2 | 2 |
Publications ? help Back to Top | |||
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