PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100219760101
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ARF
Protein Properties Length: 700aa    MW: 78224.9 Da    PI: 7.3092
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100219760101genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.94.6e-24180281199
                                   EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                                   f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L 
  Ote100219760101|100219760101 180 FCKTLTASDTSSHGGFSVPRRAAEDCfpplnyEKQ-RPSQELVATDLHGVEWRFRHIYRGQPRRHLLTTGWSTFVSQKNLV 259
                                   99****************************96444.45679**************************************** PP

                                   TT-EEEEEE-SSSEE..EEEEE-S CS
                            B3  76 egDfvvFkldgrsefelvvkvfrk 99 
                                   +gD v+F   + + + l+++++r+
  Ote100219760101|100219760101 260 SGDAVLFL--RGEAGDLRLGIRRA 281
                                   ********..34888899999986 PP
2Auxin_resp1003.3e-33306387182
                    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrs 81 
                                   +a+a+s++ +F+vvY+Pr+s+s+F+v++++++k   + + +G+Rf m++ ++ds+err+sG+v+gv d+dp+rWpnSkWrs
  Ote100219760101|100219760101 306 VANAISSNGMFNVVYSPRTSHSNFIVPYQNYLKCNAKLIPIGTRFEMKYTMDDSPERRCSGVVTGVGDADPYRWPNSKWRS 386
                                   689*****************************************************************************9 PP

                    Auxin_resp  82 L 82 
                                   L
  Ote100219760101|100219760101 387 L 387
                                   9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.4E-41172288IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-40173294IPR015300DNA-binding pseudobarrel domain
CDDcd100176.06E-22179280No hitNo description
PfamPF023625.9E-22180281IPR003340B3 DNA binding domain
PROSITE profilePS5086313.225180282IPR003340B3 DNA binding domain
SMARTSM010195.1E-23180282IPR003340B3 DNA binding domain
PfamPF065073.3E-28306387IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MEIDLNLALC DDMEKNACDN GGECYHFSLS GSAPCYSSNA AASXXXXXXX XXXXXXXXXX  60
XXXXXXXXEL WHACAGPVAI LPKKGDLVVY FPQGHLEQAY SSTFSPKEMP QFDLPPQILC  120
RVVDAQLIAN KENDEVYAQL TLHPRPQMVG VELEGKEKEY VGVDEGGNGE APAKSTSQMF  180
CKTLTASDTS SHGGFSVPRR AAEDCFPPLN YEKQRPSQEL VATDLHGVEW RFRHIYRGQP  240
RRHLLTTGWS TFVSQKNLVS GDAVLFLRGE AGDLRLGIRR AARPRYSIPD SIINDQNHYP  300
NVLSHVANAI SSNGMFNVVY SPRTSHSNFI VPYQNYLKCN AKLIPIGTRF EMKYTMDDSP  360
ERRCSGVVTG VGDADPYRWP NSKWRSLVVR WDDVVDHQER VSPWEINSSS SYANPNTQPF  420
PGVKRLRPNL LASPNGSSHS SGGGVVSDFG EYVRSLKVLQ GQENMGFVLP LYRSDRAIPN  480
IMEKISNGEF VRSQAPATFT GFLESNWFPK VLQGQEICSF QYLARKCGWN VYKTYQFPTP  540
GFYPLASEGA RNMSVFRASP THSGVATDVG KVLHFADETC APETELEKIP VCRLFGYSLN  600
EDSAILNMQR QSKRRCSKVH RHGYKELLTE LDRLFSMKGL VHDPNHVGSK ANVLIMAIFN  660
SRADACNNPN ARLSAVFLGD ARWGIHSHSH CHPDTESPET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1166941422360Auxin response factor 1
4ldw_A1e-1166941422360Auxin response factor 1
4ldw_B1e-1166941422360Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089884.10.0auxin response factor 4 isoform X2
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A2G9H9450.0A0A2G9H945_9LAMI; Auxin response factor
STRINGMigut.N02611.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51432234
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]