PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100219740031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 440aa    MW: 48062 Da    PI: 8.8176
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100219740031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.31.8e-29177233360
                                   -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                   Dg++WrKYGqK+vkgse+prsYY+Ct+++Cpvkkkve++  d+k+ ei+Y+geH+h+k
  Ote100219740031|100219740031 177 DGHHWRKYGQKQVKGSEYPRSYYKCTYPNCPVKKKVEKTL-DGKIAEIVYKGEHHHSK 233
                                   9***************************************.***************85 PP
2WRKY78.76.5e-25373421250
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEE CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvvei 50 
                                    Dgy+WrKYGqK+vkg++fprsYYrCt +gC+v+k ver+ edp ++++
  Ote100219740031|100219740031 373 GDGYRWRKYGQKVVKGKKFPRSYYRCTNPGCNVRKYVERTLEDPGTFIT 421
                                   6******************************************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-27162234IPR003657WRKY domain
SuperFamilySSF1182907.85E-24173234IPR003657WRKY domain
SMARTSM007746.8E-32175233IPR003657WRKY domain
PROSITE profilePS5081122.056177234IPR003657WRKY domain
PfamPF031067.0E-23177231IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.7E-25359421IPR003657WRKY domain
PROSITE profilePS5081124.593367421IPR003657WRKY domain
SuperFamilySSF1182904.84E-22367422IPR003657WRKY domain
SMARTSM007743.8E-23372422IPR003657WRKY domain
PfamPF031065.1E-19374421IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MVEIEEKEKI VIAKPVACRP RCSNPKSFSD LLCVASNASP SAAFSETAGA VIRPTTVRFK  60
PAGVQGSAAC RSSKQEPESN ATCNVIYKPV AKLVSRTTVS LLSNLGGNGI APMREVSEVG  120
ERAQSSNQVA NHTDATLEVL HNFPPESEQR ANATAGNSAD ETKSSFPANS RDRPSYDGHH  180
WRKYGQKQVK GSEYPRSYYK CTYPNCPVKK KVEKTLDGKI AEIVYKGEHH HSKPPPPNHT  240
PSDDHARTPA YEATGEEGQI QLMNQQSEIV RAHEGKSENQ DVTELSNQST FSATPSIRNP  300
ITVCSAGPST SNISLGVSGE CEEVIEFIEA EGGGVRSKRT KSANQLVRGR TVGEGNSDPE  360
TVVQNNSDSG MVGDGYRWRK YGQKVVKGKK FPRSYYRCTN PGCNVRKYVE RTLEDPGTFI  420
TXXXXXXAST TIPLPQRRQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-20177421877Probable WRKY transcription factor 4
2lex_A4e-20177421877Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094753.11e-167WRKY transcription factor 44-like
RefseqXP_011094754.11e-167WRKY transcription factor 44-like
RefseqXP_020553423.11e-167WRKY transcription factor 44-like
RefseqXP_020553424.11e-167WRKY transcription factor 44-like
TrEMBLA0A0D5YA250.0A0A0D5YA25_SALMI; WRKY protein
STRINGVIT_08s0040g03070.t011e-128(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99512227