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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100210970051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | NF-YA | ||||||||
Protein Properties | Length: 290aa MW: 32734.5 Da PI: 9.4689 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.9 | 2.9e-32 | 184 | 240 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rak+e e+kl ++srkpylheSRh hAlrR+Rg+gGrF Ote100210970051|100210970051 184 EEPVYVNAKQYHAILRRRQLRAKAEMENKL-TRSRKPYLHESRHLHALRRARGCGGRF 240 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 4.1E-36 | 182 | 243 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.744 | 183 | 243 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.7E-27 | 185 | 240 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.7E-23 | 186 | 208 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 188 | 208 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.7E-23 | 217 | 240 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MSNSRLFLHA WQAGLPIGLL RDYVLMFYFK KISEGNMQRR PDKREQCEFD TKGYNLHFSS 60 HGFHYGIGDN FVSANDLSKT SLTMTSSNQL HSQPKGQNSD YPDTGWRQEH GNVASLLVPP 120 MMGEYIGHES KGDQIGNSKA HPAYSYLEPQ SRDSTQVHGR SESIYPELHP VPHVGAALPF 180 APSEEPVYVN AKQYHAILRR RQLRAKAEME NKLTRSRKPY LHESRHLHAL RRARGCGGRF 240 INTKKAEKTT PSCSHEEGGS SAGDSPPLAS SDYQTADAAK FFQWTNYHSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 5e-20 | 184 | 251 | 2 | 67 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011075221.1 | 4e-72 | nuclear transcription factor Y subunit A-1-like | ||||
TrEMBL | A0A4D9BFV3 | 6e-95 | A0A4D9BFV3_SALSN; Uncharacterized protein | ||||
STRING | XP_008790783.1 | 8e-43 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA20426 | 3 | 3 |