PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100210970051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NF-YA
Protein Properties Length: 290aa    MW: 32734.5 Da    PI: 9.4689
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100210970051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.92.9e-32184240158
                     CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                   +ep+YVNaKQy++Il+RRq Rak+e e+kl ++srkpylheSRh hAlrR+Rg+gGrF
  Ote100210970051|100210970051 184 EEPVYVNAKQYHAILRRRQLRAKAEMENKL-TRSRKPYLHESRHLHALRRARGCGGRF 240
                                   69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.1E-36182243IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.744183243IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.7E-27185240IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.7E-23186208IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860188208IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.7E-23217240IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MSNSRLFLHA WQAGLPIGLL RDYVLMFYFK KISEGNMQRR PDKREQCEFD TKGYNLHFSS  60
HGFHYGIGDN FVSANDLSKT SLTMTSSNQL HSQPKGQNSD YPDTGWRQEH GNVASLLVPP  120
MMGEYIGHES KGDQIGNSKA HPAYSYLEPQ SRDSTQVHGR SESIYPELHP VPHVGAALPF  180
APSEEPVYVN AKQYHAILRR RQLRAKAEME NKLTRSRKPY LHESRHLHAL RRARGCGGRF  240
INTKKAEKTT PSCSHEEGGS SAGDSPPLAS SDYQTADAAK FFQWTNYHSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-20184251267NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075221.14e-72nuclear transcription factor Y subunit A-1-like
TrEMBLA0A4D9BFV36e-95A0A4D9BFV3_SALSN; Uncharacterized protein
STRINGXP_008790783.18e-43(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2042633