PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100209940031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 191aa    MW: 22327.2 Da    PI: 4.703
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100209940031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.4e-181467356
                                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                   +++f++eq++ Le  Fe++ ++  +++ e A++lgL+ rqV +WFqN+Ra++k
  Ote100209940031|100209940031 14 DKRRFSDEQIRCLEVIFESETKLEPRKKVEVARELGLQPRQVAIWFQNKRARWK 67
                                  5679*************************************************9 PP
2HD-ZIP_I/II116.21.9e-3714105293
                   HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 
                                    krr+s+eq+++LE  Fe+e+kLep++Kve+areLglqprqva+WFqn+RAR+k+k++Ek+y+ L ++y++l+++ e+L+k
  Ote100209940031|100209940031  14 DKRRFSDEQIRCLEVIFESETKLEPRKKVEVARELGLQPRQVAIWFQNKRARWKSKHIEKEYSILLANYNSLAAQFESLKK 94 
                                   59******************************************************************************* PP

                   HD-ZIP_I/II  83 eveeLreelke 93 
                                   e+++L  +l+e
  Ote100209940031|100209940031  95 EKNSLLLQLEE 105
                                   *****988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-18776IPR009057Homeodomain-like
PROSITE profilePS5007117.248969IPR001356Homeobox domain
SMARTSM003891.9E-161173IPR001356Homeobox domain
SuperFamilySSF466897.76E-171179IPR009057Homeodomain-like
PfamPF000461.1E-151467IPR001356Homeobox domain
CDDcd000861.57E-131570No hitNo description
PRINTSPR000316.9E-64049IPR000047Helix-turn-helix motif
PROSITE patternPS0002704467IPR017970Homeobox, conserved site
PRINTSPR000316.9E-64965IPR000047Helix-turn-helix motif
PfamPF021837.8E-1169108IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MQKMLEKRKK GKNDKRRFSD EQIRCLEVIF ESETKLEPRK KVEVARELGL QPRQVAIWFQ  60
NKRARWKSKH IEKEYSILLA NYNSLAAQFE SLKKEKNSLL LQLEELKSEE GGRCSDGESS  120
ECVKVCDLEV RNDLLSVSDD DSCMKAELLQ FHDENELLTM VETASDWGSL ESDEIDIINT  180
QSSGEWWDFW S
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093009.17e-60homeobox-leucine zipper protein ATHB-12
SwissprotP468973e-47ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A2G9H7436e-66A0A2G9H743_9LAMI; Transcription factor HEX
STRINGGLYMA16G02390.12e-56(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]