PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100209250011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 279aa    MW: 31453.2 Da    PI: 8.4565
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100209250011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.5e-131461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg+WT eEd +l + +   G  +W+++++  g+ R++k+c++rw +yl
  Ote100209250011|100209250011 14 RGPWTIEEDNKLMNFILNNGIQCWRLVPKLAGLLRCGKSCRLRWINYL 61
                                  89******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-21564IPR009057Homeodomain-like
PROSITE profilePS5129421.357965IPR017930Myb domain
SMARTSM007171.4E-71363IPR001005SANT/Myb domain
PfamPF002491.1E-111461IPR001005SANT/Myb domain
SuperFamilySSF466891.32E-181587IPR009057Homeodomain-like
CDDcd001675.94E-61661No hitNo description
Gene3DG3DSA:1.10.10.603.5E-66587IPR009057Homeodomain-like
Gene3DG3DSA:2.60.40.7901.8E-31132278IPR008978HSP20-like chaperone
SuperFamilySSF497644.04E-28160272IPR008978HSP20-like chaperone
PROSITE profilePS0103120.244182266IPR002068Alpha crystallin/Hsp20 domain
CDDcd064648.89E-25182266No hitNo description
PfamPF000113.1E-21182279IPR002068Alpha crystallin/Hsp20 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRQPCCEKN GVKRGPWTIE EDNKLMNFIL NNGIQCWRLV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGAL SEAEEELIID LHSRLGNSPP ISGPKIAAKA AGGDARENLD HLQRQNKPPK  120
IRTAPVAPIG LWDRFPTART VQQMMETMER MMEDPPAYGS AWPSASTPAE TASYGRGRMP  180
WEIKEAETEY KLRFDMPGMT REDVRVWVEE KMLVVKAEKV PGENVNGGNE WSDGKYSSRI  240
ALPENVEFEK IKAEVKDGVL YITIPKASSE AKVFDISVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5nms_A2e-33131279114325.3 kDa heat shock protein, chloroplastic
5nms_C2e-33131279114325.3 kDa heat shock protein, chloroplastic
5nms_D2e-33131279114325.3 kDa heat shock protein, chloroplastic
5nms_G2e-33131279114325.3 kDa heat shock protein, chloroplastic
5nms_I2e-33131279114325.3 kDa heat shock protein, chloroplastic
5nms_J2e-33131279114325.3 kDa heat shock protein, chloroplastic
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022151874.12e-85small heat shock protein, chloroplastic-like
TrEMBLA0A2G9I9G68e-84A0A2G9I9G6_9LAMI; Uncharacterized protein
STRINGXP_002515014.16e-84(Ricinus communis)