PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100208680011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 403aa MW: 45073.5 Da PI: 8.9712 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.3 | 3e-19 | 26 | 84 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++ +++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Ote100208680011|100208680011 26 KYVRYTPEQVEALERLYHDCPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 84 5679*****************************************************97 PP | |||||||
2 | START | 178.9 | 2.9e-56 | 171 | 379 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetl 82 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W +++++++++ Ote100208680011|100208680011 171 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDMV 250 7899******************************************************.8888888888************ PP EEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEE CS START 83 evissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepk 157 +v+ ++ g+++l +++l+a+++l+p Rdf+ +Ry+ + +g++v++++S++++q+ p+ +++vRae+lpSg+li+p+ Ote100208680011|100208680011 251 NVLPTAngGTIELLYMQLYAPTTLAPgRDFWLLRYTSVMDDGSLVVCERSLSNTQNGPSmppVPNFVRAEMLPSGYLIRPC 331 ****9999*************************************************999999****************** PP CTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 158 snghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 ++g+s +++v+h++l++++++++lr+l++s+++ ++++++a+l+++++ Ote100208680011|100208680011 332 EGGGSIIHIVDHMNLEAWSVPEVLRPLYESSTVLAQRITTAALRQLRQ 379 ********************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.985 | 21 | 85 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.7E-16 | 23 | 89 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.28E-17 | 24 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.61E-16 | 26 | 86 | No hit | No description |
Pfam | PF00046 | 8.1E-17 | 27 | 84 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-19 | 28 | 84 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 4.79E-6 | 78 | 117 | No hit | No description |
PROSITE profile | PS50848 | 25.853 | 161 | 389 | IPR002913 | START domain |
CDD | cd08875 | 1.76E-79 | 165 | 381 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.3E-23 | 170 | 365 | IPR023393 | START-like domain |
SMART | SM00234 | 1.8E-40 | 170 | 380 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.2E-38 | 170 | 381 | No hit | No description |
Pfam | PF01852 | 4.3E-54 | 171 | 379 | IPR002913 | START domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MAISCKXXXX XXXXXXXXXX XXXNGKYVRY TPEQVEALER LYHDCPKPSS MRRQQLIREC 60 PILSNIEPKQ IKVWFQNRRC REKQRKEASR LQAVNRKLTA MNKLLMEEND RLQKQVSQLV 120 YENSHFRQQT PNNALSAKDT SCDSVVTSGQ KHHLTPQHPP RDASPAGLLS IAEETLAEFL 180 SKATGTAVEW VQMPGMKPGP DSIGIVAISH GCTGVAARAC GLVGLEPTRV AEILKDRPSW 240 FRDCRAVDMV NVLPTANGGT IELLYMQLYA PTTLAPGRDF WLLRYTSVMD DGSLVVCERS 300 LSNTQNGPSM PPVPNFVRAE MLPSGYLIRP CEGGGSIIHI VDHMNLEAWS VPEVLRPLYE 360 SSTVLAQRIT TAALRQLRQI AQDISQSSVN NWGRRPAALR ALS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011072422.1 | 0.0 | LOW QUALITY PROTEIN: homeobox-leucine zipper protein ATHB-15 | ||||
Swissprot | Q9ZU11 | 0.0 | ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15 | ||||
TrEMBL | A0A142CD28 | 0.0 | A0A142CD28_9LAMI; Homeobox-leucine zipper protein ATHB-15 | ||||
TrEMBL | A0A1V0JHU3 | 0.0 | A0A1V0JHU3_SESIN; Homeobox-leucine zipper protein ATHB-15 | ||||
STRING | Migut.I00906.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA457 | 24 | 140 |
Publications ? help Back to Top | |||
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